PubMed Mentions
The links below are to publications on PubMed referring to NeuroMorpho.Org. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.
| Publication/References | |
| Classical-Contextual Interactions in V1 May Rely on Dendritic Computations. Description: Jin, Lei, et al. Classical-Contextual Interactions in V1 May Rely on Dendritic Computations. ''Neuroscience''. 2022 May 1; '''489''': 234-250 | |
| Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. Description: Dainauskas, Justinas J, et al. Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. ''Front Comput Neurosci''. 2023; '''17''': 1305169 | |
| Full-scale scaffold model of the human hippocampus CA1 area. Description: Gandolfi, Daniela, et al. Full-scale scaffold model of the human hippocampus CA1 area. ''Nat Comput Sci''. 2023 Mar; '''3''' (3):264-276 | |
| A guide to the BRAIN Initiative Cell Census Network data ecosystem. Description: Hawrylycz, Michael, et al. A guide to the BRAIN Initiative Cell Census Network data ecosystem. ''PLoS Biol''. 2023 Jun; '''21''' (6):e3002133 | |
| Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics. Description: Dura-Bernal, Salvador, et al. Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics. ''Cell Rep''. 2023 Jun 27; '''42''' (6):112574 | |
| Integrin beta3 regulates apical dendritic morphology of pyramidal neurons throughout hippocampal CA3. Description: Handwerk, Christopher J, et al. Integrin beta3 regulates apical dendritic morphology of pyramidal neurons throughout hippocampal CA3. ''Hippocampus''. 2023 Aug; '''33''' (8):936-947 | |
| Neuronal branching is increasingly asymmetric near synapses, potentially enabling plasticity while minimizing energy dissipation and conduction time. Description: Desai-Chowdhry, Paheli, et al. Neuronal branching is increasingly asymmetric near synapses, potentially enabling plasticity while minimizing energy dissipation and conduction time. ''J R Soc Interface''. 2023 Sep; '''20''' (206):20230265 | |
| Online conversion of reconstructed neural morphologies into standardized SWC format. Description: Mehta, Ketan, et al. Online conversion of reconstructed neural morphologies into standardized SWC format. ''Nat Commun''. 2023 Nov 16; '''14''' (1):7429 | |
| Topology recapitulates morphogenesis of neuronal dendrites. Description: Liao, Maijia, et al. Topology recapitulates morphogenesis of neuronal dendrites. ''Cell Rep''. 2023 Nov 28; '''42''' (11):113268 | |
| Evolution of Consciousness. Description: Georgiev, Danko D. Evolution of Consciousness. ''Life (Basel)''. 2023 Dec 27; '''14''' (1): | |
| Biophysical modeling of the whole-cell dynamics of C. elegans motor and interneurons families. Description: Nicoletti, Martina, et al. Biophysical modeling of the whole-cell dynamics of C. elegans motor and interneurons families. ''PLoS One''. 2024; '''19''' (3):e0298105 | |
| Kinetics and functional consequences of BK channels activation by N-type Ca(2+) channels in the dendrite of mouse neocortical layer-5 pyramidal neurons. Description: Blomer, Laila Ananda, et al. Kinetics and functional consequences of BK channels activation by N-type Ca(2+) channels in the dendrite of mouse neocortical layer-5 pyramidal neurons. ''Front Cell Neurosci''. 2024; '''18''': 1353895 | |
| Hippocampome.org v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. Description: Wheeler, Diek W, et al. Hippocampome.org v2.0: a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. ''bioRxiv''. 2024 Jan 8; | |
| Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. Description: Wheeler, Diek W, et al. Hippocampome.org 2.0 is a knowledge base enabling data-driven spiking neural network simulations of rodent hippocampal circuits. ''Elife''. 2024 Feb 12; '''12''': | |
| A Novel Method for Clustering Cellular Data to Improve Classification. Description: Wheeler, Diek W, et al. A Novel Method for Clustering Cellular Data to Improve Classification. ''ArXiv''. 2024 Mar 5; | |
| Accelerating the continuous community sharing of digital neuromorphology data. Description: Tecuatl, Carolina, et al. Accelerating the continuous community sharing of digital neuromorphology data. ''bioRxiv''. 2024 Mar 18; | |
| Gossamer: Scaling Image Processing and Reconstruction to Whole Brains. Description: Marrett, Karl, et al. Gossamer: Scaling Image Processing and Reconstruction to Whole Brains. ''bioRxiv''. 2024 Apr 9; | |
| Functional specialization of hippocampal somatostatin-expressing interneurons. Description: Chamberland, Simon, et al. Functional specialization of hippocampal somatostatin-expressing interneurons. ''Proc Natl Acad Sci U S A''. 2024 Apr 23; '''121''' (17):e2306382121 | |
| Automated neuronal reconstruction with super-multicolour Tetbow labelling and threshold-based clustering of colour hues. Description: Leiwe, Marcus N, et al. Automated neuronal reconstruction with super-multicolour Tetbow labelling and threshold-based clustering of colour hues. ''Nat Commun''. 2024 Jun 25; '''15''' (1):5279 | |
| A strong direct link from the layer 3/4 border to layer 6 of cat primary visual cortex. Description: Martin, Kevan A C, et al. A strong direct link from the layer 3/4 border to layer 6 of cat primary visual cortex. ''Brain Struct Funct''. 2024 Jul; '''229''' (6):1397-1415 | |
| Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling. Description: Abdellah, Marwan, et al. Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling. ''Brief Bioinform''. 2024 Jul 25; '''25''' (5): | |
| Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure. Description: Puebla, Iratxe, et al. Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure. ''PLoS Comput Biol''. 2024 Aug; '''20''' (8):e1012296 | |
| Learning meaningful representation of single-neuron morphology via large-scale pre-training. Description: Fan, Yimin, et al. Learning meaningful representation of single-neuron morphology via large-scale pre-training. ''Bioinformatics''. 2024 Sep 1; '''40''' (Suppl 2):ii128-ii136 | |
| Synaptic interactions between stellate cells and parvalbumin interneurons in layer 2 of the medial entorhinal cortex are organized at the scale of grid cell clusters. Description: Huang, Li-Wen, et al. Synaptic interactions between stellate cells and parvalbumin interneurons in layer 2 of the medial entorhinal cortex are organized at the scale of grid cell clusters. ''Elife''. 2024 Nov 1; '''12''': | |
| Self-organized and self-sustained ensemble activity patterns in simulation of mouse primary motor cortex. Description: Doherty, D W, et al. Self-organized and self-sustained ensemble activity patterns in simulation of mouse primary motor cortex. ''bioRxiv''. 2025 Jan 14; | |
| Neurons exploit stochastic growth to rapidly and economically build dense radially oriented dendritic arbors. Description: Ouyang, Xiaoyi, et al. Neurons exploit stochastic growth to rapidly and economically build dense radially oriented dendritic arbors. ''bioRxiv''. 2025 Feb 24; | |
| Connectivity of single neurons classifies cell subtypes in mouse brains. Description: Liu, Lijuan, et al. Connectivity of single neurons classifies cell subtypes in mouse brains. ''Nat Methods''. 2025 Apr; '''22''' (4):861-873 | |
| Alpha_Mesh_Swc: automatic and robust surface mesh generation from the skeleton description of brain cells. Description: McSweeney-Davis, Alex, et al. Alpha_Mesh_Swc: automatic and robust surface mesh generation from the skeleton description of brain cells. ''Brief Bioinform''. 2025 May 1; '''26''' (3): | |
| Neurons exploit stochastic growth to rapidly and economically build dense dendritic arbors. Description: Ouyang, Xiaoyi, et al. Neurons exploit stochastic growth to rapidly and economically build dense dendritic arbors. ''Nat Commun''. 2025 Jul 1; '''16''' (1):5903 | |
| Enhanced beta power emerges from simulated parkinsonian primary motor cortex. Description: Doherty, Donald W, et al. Enhanced beta power emerges from simulated parkinsonian primary motor cortex. ''NPJ Parkinsons Dis''. 2025 Aug 5; '''11''' (1):230 | |
| Spatio-temporal dynamics of lateral Na(+) diffusion in apical dendrites of mouse CA1 pyramidal neurons. Description: Nelson, Joel S E, et al. Spatio-temporal dynamics of lateral Na(+) diffusion in apical dendrites of mouse CA1 pyramidal neurons. ''bioRxiv''. 2025 Aug 6; | |
| DendroTweaks: An interactive approach for unraveling dendritic dynamics. Description: Makarov, Roman, et al. DendroTweaks: An interactive approach for unraveling dendritic dynamics. ''bioRxiv''. 2025 Sep 10; | |
| Computational Framework for Modeling Effects of Brain Collateral Circulation. Description: Mut, Fernando, et al. Computational Framework for Modeling Effects of Brain Collateral Circulation. ''Int J Numer Method Biomed Eng''. 2025 Dec; '''41''' (12):e70121 | |
| Regulation of dendrite and axon growth and arborization by CD40L-reverse signaling: Interrelationships among JNK, PKC, and ERK1/2 signaling pathways. Description: Carriba, Paulina. Regulation of dendrite and axon growth and arborization by CD40L-reverse signaling: Interrelationships among JNK, PKC, and ERK1/2 signaling pathways. ''Neural Regen Res''. 2026 Mar 1; '''21''' (3):1116-1117 |