Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871713
2
Nilearn
520229
3
ITK-SNAP
421159
4
FCP/INDI PRIVATE SITE
296148
5
BIDScoin
201889
6
1000 Functional Connectomes Project
173331
7
IIT Human Brain Atlas (v.5.0)
161775
8
MRIcroGL
153338
9
CONN : functional connectivity toolbox
151527
10
DTI-TK
89105
11
BrainNet Viewer
87934
12
fMRI-CPCA
74134
13
IBSR
72161
14
Multi-Modal MRI Reproducibility Resource
63368
15
WFU_PickAtlas
60280
16
BioImage Suite
59358
17
age-ility
53439
18
BXH/XCEDE Tools
49819
19
Solar Eclipse Imaging Genetics tools
43503
20
PANDA: a pipeline tool for diffusion MRI
42780
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
42325
22
JIST: Java Image Science Toolkit
41472
23
EEGLAB
39842
24
NIDB - Neuroinformatics Database
39545
25
The Neuro Bureau
39539
26
FreeSurfer
37846
27
GIFTI
37503
28
TOADS-CRUISE Brain Segmentation Tools
36741
29
fNIRS Data Analysis Environment
35142
30
Functional Imaging BIRN
34865
31
3T DWI test-retest reliability dataset
33002
32
NITRC Computational Environment (NITRC-CE)
32095
33
Generalized PPI Toolbox
31817
34
BrainMap Database
26849
35
Homer2
23855
36
NeuroDebian
23061
37
Anima
22274
38
BrainVisa Morphologist extensions
22182
39
Network-Based Statistic (NBS)
22069
40
BrainFlow
20587
41
NYU CSC TestRetest
20565
42
UNC 0-1-2 Infant Atlases
20456
43
XNAT Extras
19126
44
Mango
17924
45
MITK Diffusion
17387
46
Brain Biomechanics Imaging Resources
16867
47
Multimodal Visual Consciousness Study Dataset
16720
48
Neuroimaging Made Easy Blog
16522
49
QuickNII - Serial section aligner to volumetric atlases
16344
50
Automatic Registration Toolbox
16134
51
Data Format Tools
15780
52
GRETNA
15463
53
Vaa3D and Vaa3D-Neuron
15093
54
3D Slicer
14906
55
Surf Ice
14862
56
Diffusion Toolkit / TrackVis
14707
57
Talairach Daemon
14459
58
Spatially Constrained Parcellation
14393
59
Melbourne Subcortex Atlas
14308
60
CBS High-Res Brain Processing Tools
14273
61
Freesurfer fsaverage
13993
62
Brainstorm
13574
63
SRI24 Atlas: Normal Adult Brain Anatomy
13478
64
DCP：Diffusion Connectome Pipeline
13254
65
BrainMask Volume Processing Tool
13199
66
Group ICA Toolbox (GIFT and EEGIFT)
13020
67
3DSlicerLupusLesionModule
12791
68
MRtrix
12698
69
dcm2nii
12643
70
libminc - Medical Image NetCDF library
12568
71
BrainSuite
12417
72
FSL
12308
73
Computational Morphometry Toolkit (CMTK)
12279
74
CANDI Neuroimaging Access Point
12217
75
DWI/DTI Quality Control Tool: DTIPrep
12030
76
Human Imaging Database (HID)
11831
77
TumorSim
11772
78
Artifact Detection Tools (ART)
11674
79
Subject Order-Independent Group ICA
11507
80
Hammer And WML Modules for 3D Slicer
11366
81
BrainVISA
11089
82
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
11029
83
NeuroImaging Analysis Kit (NIAK)
11015
84
2008 MICCAI MS Lesion Segmentation Challenge
10863
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10750
86
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10638
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10592
88
SPM for fNIRS toolbox
10085
89
Awake Rat rsfMRI Database
10053
90
ENIGMA-DTI pipeline
10040
91
NODDI Matlab Toolbox
9974
92
Source Information Flow Toolbox
9888
93
NIfTI
9834
94
Diffusional Kurtosis Estimator
9774
95
MARS (Multi-Atlas Robust Segmentation)
9624
96
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9539
97
Task Independent Fluctuations Discussion
9447
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9188
99
SPHARM-PDM Toolbox
9076
100
iBEAT
8478