Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1003018
2
MRIcron
980359
3
BIDScoin
759635
4
ITK-SNAP
469798
5
FCP/INDI PRIVATE SITE
386567
6
IIT Human Brain Atlas (v.5.0)
226160
7
fMRI-CPCA
207436
8
CONN : functional connectivity toolbox
206373
9
MRIcroGL
206305
10
1000 Functional Connectomes Project
184140
11
BrainNet Viewer
121216
12
DTI-TK
97283
13
BXH/XCEDE Tools
91530
14
NIDB - Neuroinformatics Database
89785
15
IBSR
82223
16
BioImage Suite
81251
17
age-ility
80956
18
Multi-Modal MRI Reproducibility Resource
76902
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
73372
20
Solar Eclipse Imaging Genetics tools
69660
21
JIST: Java Image Science Toolkit
66839
22
WFU_PickAtlas
66702
23
BrainFlow
64170
24
GIFTI
54757
25
PANDA: a pipeline tool for diffusion MRI
53473
26
NITRC Computational Environment (NITRC-CE)
51944
27
The Neuro Bureau
51406
28
3T DWI test-retest reliability dataset
47916
29
Functional Imaging BIRN
47415
30
TOADS-CRUISE Brain Segmentation Tools
42349
31
fNIRS Data Analysis Environment
42020
32
Multimodal Visual Consciousness Study Dataset
41438
33
EEGLAB
40077
34
Generalized PPI Toolbox
39525
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
37070
37
BrainMap Database
36740
38
Network-Based Statistic (NBS)
35193
39
MIITRA atlas
34262
40
NeuroImaging Analysis Kit (NIAK)
33007
41
UNC 0-1-2 Infant Atlases
32100
42
Brain Biomechanics Imaging Resources
31151
43
Homer2
29660
44
DWI/DTI Quality Control Tool: DTIPrep
27593
45
NeuroDebian
27504
46
TumorSim
27409
47
Anima
26968
48
BrainVisa Morphologist extensions
26839
49
NYU CSC TestRetest
26809
50
Graph Theory GLM (GTG) MATLAB Toolbox
26119
51
XNAT Extras
25052
52
Melbourne Subcortex Atlas
24063
53
CBS High-Res Brain Processing Tools
23838
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
23659
55
4D UNC Neonatal and Infant Cortical Surface Atlases
23077
56
Neuroimaging Made Easy Blog
22575
57
SPHARM-PDM Toolbox
22093
58
SRI24 Atlas: Normal Adult Brain Anatomy
20366
59
BrainMask Volume Processing Tool
19756
60
Data Format Tools
19518
61
Mango
19468
62
Vaa3D and Vaa3D-Neuron
19359
63
Fast Nonlocal Means for MRI denoising
19282
64
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19126
65
CANDI Neuroimaging Access Point
19056
66
Surf Ice
18877
67
Automatic Registration Toolbox
18649
68
MITK Diffusion
18342
69
Group ICA Toolbox (GIFT and EEGIFT)
18031
70
GRETNA
17624
71
3DSlicerLupusLesionModule
17609
72
Talairach Daemon
17137
73
Awake Rat rsfMRI Database
16968
74
Subject Order-Independent Group ICA
16957
75
Diffusion Toolkit / TrackVis
16719
76
DCP：Diffusion Connectome Pipeline
16638
77
Spatially Constrained Parcellation
16447
78
MRtrix
16440
79
3D Slicer
16307
80
Freesurfer fsaverage
16282
81
ShapePopulationViewer
16269
82
BrainSuite
16242
83
Computational Morphometry Toolkit (CMTK)
16222
84
Hammer And WML Modules for 3D Slicer
16008
85
Human Imaging Database (HID)
15954
86
ENIGMA-DTI pipeline
15530
87
AutoSeg
15280
88
MARS (Multi-Atlas Robust Segmentation)
14649
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14617
90
FSL
14336
91
Brainstorm
13844
92
Artifact Detection Tools (ART)
13578
93
ANDA
13472
94
dcm2nii
13246
95
Nighres
12900
96
libminc - Medical Image NetCDF library
12878
97
NeuroDOT
12818
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12773
99
ABSORB for groupwise registration
12663
100
Maps4Mipav (Exploratory JIST)
12647