Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871071
2
Nilearn
513038
3
ITK-SNAP
416762
4
FCP/INDI PRIVATE SITE
291593
5
1000 Functional Connectomes Project
172734
6
IIT Human Brain Atlas (v.5.0)
157887
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
150754
9
DTI-TK
88898
10
BrainNet Viewer
87063
11
BIDScoin
86438
12
fMRI-CPCA
73232
13
IBSR
71980
14
Multi-Modal MRI Reproducibility Resource
61694
15
WFU_PickAtlas
60085
16
BioImage Suite
58585
17
age-ility
51073
18
BXH/XCEDE Tools
47128
19
PANDA: a pipeline tool for diffusion MRI
42353
20
Solar Eclipse Imaging Genetics tools
41833
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41066
22
JIST: Java Image Science Toolkit
40191
23
EEGLAB
39779
24
The Neuro Bureau
39461
25
FreeSurfer
37846
26
GIFTI
36682
27
TOADS-CRUISE Brain Segmentation Tools
36484
28
fNIRS Data Analysis Environment
34165
29
Functional Imaging BIRN
34048
30
NIDB - Neuroinformatics Database
32019
31
Generalized PPI Toolbox
31451
32
3T DWI test-retest reliability dataset
30645
33
NITRC Computational Environment (NITRC-CE)
30555
34
BrainMap Database
26282
35
Homer2
23787
36
NeuroDebian
22358
37
Network-Based Statistic (NBS)
21985
38
Anima
21827
39
BrainVisa Morphologist extensions
21453
40
NYU CSC TestRetest
20413
41
UNC 0-1-2 Infant Atlases
19535
42
XNAT Extras
18407
43
Mango
17720
44
MITK Diffusion
17335
45
Neuroimaging Made Easy Blog
16331
46
Brain Biomechanics Imaging Resources
16149
47
QuickNII - Serial section aligner to volumetric atlases
16013
48
Automatic Registration Toolbox
15961
49
GRETNA
15460
50
Data Format Tools
15363
51
Surf Ice
14862
52
3D Slicer
14753
53
Vaa3D and Vaa3D-Neuron
14347
54
Diffusion Toolkit / TrackVis
14309
55
Talairach Daemon
14295
56
Spatially Constrained Parcellation
14179
57
Melbourne Subcortex Atlas
14069
58
Freesurfer fsaverage
13951
59
CBS High-Res Brain Processing Tools
13707
60
Brainstorm
13574
61
SRI24 Atlas: Normal Adult Brain Anatomy
13261
62
DCP：Diffusion Connectome Pipeline
13225
63
BrainFlow
13204
64
Group ICA Toolbox (GIFT and EEGIFT)
12912
65
BrainMask Volume Processing Tool
12669
66
dcm2nii
12642
67
libminc - Medical Image NetCDF library
12568
68
MRtrix
12476
69
Multimodal Visual Consciousness Study Dataset
12261
70
Computational Morphometry Toolkit (CMTK)
12260
71
3DSlicerLupusLesionModule
12194
72
FSL
11929
73
CANDI Neuroimaging Access Point
11816
74
BrainSuite
11774
75
DWI/DTI Quality Control Tool: DTIPrep
11635
76
Artifact Detection Tools (ART)
11545
77
Human Imaging Database (HID)
11508
78
Subject Order-Independent Group ICA
11329
79
TumorSim
11316
80
Hammer And WML Modules for 3D Slicer
11017
81
BrainVISA
10976
82
2008 MICCAI MS Lesion Segmentation Challenge
10863
83
NeuroImaging Analysis Kit (NIAK)
10636
84
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10600
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10312
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10246
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10036
88
NODDI Matlab Toolbox
9974
89
SPM for fNIRS toolbox
9970
90
Source Information Flow Toolbox
9795
91
Diffusional Kurtosis Estimator
9725
92
ENIGMA-DTI pipeline
9628
93
NIfTI
9540
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9488
95
Awake Rat rsfMRI Database
9305
96
Task Independent Fluctuations Discussion
9221
97
MARS (Multi-Atlas Robust Segmentation)
9088
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9077
99
SPHARM-PDM Toolbox
8787
100
Robust Brain Extraction (ROBEX)
8441