Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871405
2
Nilearn
516010
3
ITK-SNAP
418300
4
FCP/INDI PRIVATE SITE
293553
5
1000 Functional Connectomes Project
172954
6
IIT Human Brain Atlas (v.5.0)
159256
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
151080
9
BIDScoin
124858
10
DTI-TK
88999
11
BrainNet Viewer
87424
12
fMRI-CPCA
73684
13
IBSR
72057
14
Multi-Modal MRI Reproducibility Resource
62322
15
WFU_PickAtlas
60172
16
BioImage Suite
58835
17
age-ility
51896
18
BXH/XCEDE Tools
48156
19
PANDA: a pipeline tool for diffusion MRI
42505
20
Solar Eclipse Imaging Genetics tools
42440
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41514
22
JIST: Java Image Science Toolkit
40616
23
EEGLAB
39811
24
The Neuro Bureau
39471
25
FreeSurfer
37846
26
GIFTI
36998
27
TOADS-CRUISE Brain Segmentation Tools
36592
28
fNIRS Data Analysis Environment
34416
29
Functional Imaging BIRN
34337
30
NIDB - Neuroinformatics Database
34280
31
Generalized PPI Toolbox
31632
32
3T DWI test-retest reliability dataset
31257
33
NITRC Computational Environment (NITRC-CE)
31104
34
BrainMap Database
26471
35
Homer2
23820
36
NeuroDebian
22617
37
Network-Based Statistic (NBS)
22029
38
Anima
21947
39
BrainVisa Morphologist extensions
21723
40
NYU CSC TestRetest
20489
41
UNC 0-1-2 Infant Atlases
19907
42
XNAT Extras
18646
43
Mango
17769
44
MITK Diffusion
17364
45
Neuroimaging Made Easy Blog
16409
46
Brain Biomechanics Imaging Resources
16389
47
QuickNII - Serial section aligner to volumetric atlases
16146
48
Automatic Registration Toolbox
16023
49
BrainFlow
15884
50
Data Format Tools
15497
51
GRETNA
15460
52
Surf Ice
14862
53
3D Slicer
14808
54
Vaa3D and Vaa3D-Neuron
14611
55
Diffusion Toolkit / TrackVis
14421
56
Talairach Daemon
14347
57
Spatially Constrained Parcellation
14267
58
Melbourne Subcortex Atlas
14163
59
Multimodal Visual Consciousness Study Dataset
14095
60
Freesurfer fsaverage
13967
61
CBS High-Res Brain Processing Tools
13947
62
Brainstorm
13574
63
SRI24 Atlas: Normal Adult Brain Anatomy
13359
64
DCP：Diffusion Connectome Pipeline
13236
65
Group ICA Toolbox (GIFT and EEGIFT)
12967
66
BrainMask Volume Processing Tool
12952
67
dcm2nii
12642
68
libminc - Medical Image NetCDF library
12568
69
MRtrix
12557
70
3DSlicerLupusLesionModule
12487
71
Computational Morphometry Toolkit (CMTK)
12274
72
FSL
12037
73
BrainSuite
12005
74
CANDI Neuroimaging Access Point
11964
75
DWI/DTI Quality Control Tool: DTIPrep
11812
76
Artifact Detection Tools (ART)
11616
77
Human Imaging Database (HID)
11613
78
TumorSim
11477
79
Subject Order-Independent Group ICA
11419
80
Hammer And WML Modules for 3D Slicer
11205
81
BrainVISA
11019
82
2008 MICCAI MS Lesion Segmentation Challenge
10863
83
NeuroImaging Analysis Kit (NIAK)
10801
84
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10621
85
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10583
86
4D UNC Neonatal and Infant Cortical Surface Atlases
10487
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10240
88
SPM for fNIRS toolbox
10038
89
NODDI Matlab Toolbox
9974
90
Source Information Flow Toolbox
9828
91
ENIGMA-DTI pipeline
9806
92
Diffusional Kurtosis Estimator
9748
93
NIfTI
9650
94
Awake Rat rsfMRI Database
9582
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9507
96
MARS (Multi-Atlas Robust Segmentation)
9316
97
Task Independent Fluctuations Discussion
9283
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9118
99
SPHARM-PDM Toolbox
8924
100
Robust Brain Extraction (ROBEX)
8441