Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871551
2
Nilearn
517244
3
ITK-SNAP
419273
4
FCP/INDI PRIVATE SITE
294080
5
1000 Functional Connectomes Project
173079
6
IIT Human Brain Atlas (v.5.0)
160354
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
151247
9
BIDScoin
143736
10
DTI-TK
89043
11
BrainNet Viewer
87578
12
fMRI-CPCA
73883
13
IBSR
72105
14
Multi-Modal MRI Reproducibility Resource
62667
15
WFU_PickAtlas
60229
16
BioImage Suite
59001
17
age-ility
52754
18
BXH/XCEDE Tools
48830
19
Solar Eclipse Imaging Genetics tools
42892
20
PANDA: a pipeline tool for diffusion MRI
42637
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41759
22
JIST: Java Image Science Toolkit
40951
23
EEGLAB
39820
24
The Neuro Bureau
39492
25
FreeSurfer
37846
26
GIFTI
37218
27
TOADS-CRUISE Brain Segmentation Tools
36657
28
NIDB - Neuroinformatics Database
36130
29
fNIRS Data Analysis Environment
34568
30
Functional Imaging BIRN
34535
31
3T DWI test-retest reliability dataset
31756
32
Generalized PPI Toolbox
31725
33
NITRC Computational Environment (NITRC-CE)
31429
34
BrainMap Database
26564
35
Homer2
23829
36
NeuroDebian
22779
37
Network-Based Statistic (NBS)
22043
38
Anima
22006
39
BrainVisa Morphologist extensions
21901
40
NYU CSC TestRetest
20524
41
UNC 0-1-2 Infant Atlases
20121
42
XNAT Extras
18785
43
Mango
17849
44
MITK Diffusion
17372
45
BrainFlow
17115
46
Brain Biomechanics Imaging Resources
16541
47
Neuroimaging Made Easy Blog
16460
48
QuickNII - Serial section aligner to volumetric atlases
16233
49
Automatic Registration Toolbox
16066
50
Data Format Tools
15608
51
GRETNA
15460
52
Surf Ice
14862
53
3D Slicer
14849
54
Multimodal Visual Consciousness Study Dataset
14791
55
Vaa3D and Vaa3D-Neuron
14759
56
Diffusion Toolkit / TrackVis
14565
57
Talairach Daemon
14382
58
Spatially Constrained Parcellation
14318
59
Melbourne Subcortex Atlas
14221
60
CBS High-Res Brain Processing Tools
14088
61
Freesurfer fsaverage
13975
62
Brainstorm
13574
63
SRI24 Atlas: Normal Adult Brain Anatomy
13430
64
DCP：Diffusion Connectome Pipeline
13243
65
BrainMask Volume Processing Tool
13072
66
Group ICA Toolbox (GIFT and EEGIFT)
12989
67
dcm2nii
12642
68
3DSlicerLupusLesionModule
12627
69
MRtrix
12604
70
libminc - Medical Image NetCDF library
12568
71
Computational Morphometry Toolkit (CMTK)
12276
72
FSL
12138
73
BrainSuite
12134
74
CANDI Neuroimaging Access Point
12077
75
DWI/DTI Quality Control Tool: DTIPrep
11885
76
Human Imaging Database (HID)
11718
77
Artifact Detection Tools (ART)
11642
78
TumorSim
11580
79
Subject Order-Independent Group ICA
11454
80
Hammer And WML Modules for 3D Slicer
11272
81
BrainVISA
11046
82
NeuroImaging Analysis Kit (NIAK)
10910
83
2008 MICCAI MS Lesion Segmentation Challenge
10863
84
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10769
85
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10626
86
4D UNC Neonatal and Infant Cortical Surface Atlases
10588
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10369
88
SPM for fNIRS toolbox
10062
89
NODDI Matlab Toolbox
9974
90
ENIGMA-DTI pipeline
9899
91
Source Information Flow Toolbox
9850
92
Diffusional Kurtosis Estimator
9755
93
NIfTI
9720
94
Awake Rat rsfMRI Database
9692
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9522
96
MARS (Multi-Atlas Robust Segmentation)
9428
97
Task Independent Fluctuations Discussion
9349
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9137
99
SPHARM-PDM Toolbox
8964
100
Robust Brain Extraction (ROBEX)
8441