PubMed Mentions
The links below are to publications on PubMed referring to NiftyReg. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.
| Publication/References | |
| Tractography-based parcellation does not provide strong evidence of anatomical organisation within the thalamus. Description: Clayden, Jonathan D, et al. Tractography-based parcellation does not provide strong evidence of anatomical organisation within the thalamus. ''Neuroimage''. 2019 Oct 1; '''199''': 418-426 | |
| Generalised boundary shift integral for longitudinal assessment of spinal cord atrophy. Description: Prados, Ferran, et al. Generalised boundary shift integral for longitudinal assessment of spinal cord atrophy. ''Neuroimage''. 2020 Apr 1; '''209''': 116489 | |
| AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. Description: Coupe, Pierrick, et al. AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. ''Neuroimage''. 2020 Oct 1; '''219''': 117026 | |
| Axon diameter index estimation independent of fiber orientation distribution using high-gradient diffusion MRI. Description: Fan, Qiuyun, et al. Axon diameter index estimation independent of fiber orientation distribution using high-gradient diffusion MRI. ''Neuroimage''. 2020 Nov 15; '''222''': 117197 | |
| Quantity versus quality: Age-related differences in muscle volume, intramuscular fat, and mechanical properties in the triceps surae. Description: Pinel, Sabrina, et al. Quantity versus quality: Age-related differences in muscle volume, intramuscular fat, and mechanical properties in the triceps surae. ''Exp Gerontol''. 2021 Dec; '''156''': 111594 | |
| Magnetic susceptibility anisotropy in normal appearing white matter in multiple sclerosis from single-orientation acquisition. Description: Sibgatulin, Renat, et al. Magnetic susceptibility anisotropy in normal appearing white matter in multiple sclerosis from single-orientation acquisition. ''Neuroimage Clin''. 2022; '''35''': 103059 | |
| DIR-based models to predict weekly anatomical changes in head and neck cancer proton therapy. Description: Zhang, Ying, et al. DIR-based models to predict weekly anatomical changes in head and neck cancer proton therapy. ''Phys Med Biol''. 2022 Apr 15; '''67''' (9): | |
| Non-standard pipeline without MRI has replicability in computation of Centiloid scale values for PiB and (18)F-labeled amyloid PET tracers. Description: Fujishima, Motonobu, et al. Non-standard pipeline without MRI has replicability in computation of Centiloid scale values for PiB and (18)F-labeled amyloid PET tracers. ''Neuroimage Rep''. 2022 Sep; '''2''' (3):100101 | |
| Volumetric analysis of the piriform cortex in temporal lobe epilepsy. Description: Iqbal, Sabahat, et al. Volumetric analysis of the piriform cortex in temporal lobe epilepsy. ''Epilepsy Res''. 2022 Sep; '''185''': 106971 | |
| Pre-treatment analysis of non-rigid variations can assist robust intensity-modulated proton therapy plan selection for head and neck patients. Description: Zhang, Ying, et al. Pre-treatment analysis of non-rigid variations can assist robust intensity-modulated proton therapy plan selection for head and neck patients. ''Med Phys''. 2022 Dec; '''49''' (12):7683-7693 | |
| ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. Description: Hernandez Petzsche, Moritz R, et al. ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. ''Sci Data''. 2022 Dec 10; '''9''' (1):762 | |
| Free-running 3D whole-heart T(1) and T(2) mapping and cine MRI using low-rank reconstruction with non-rigid cardiac motion correction. Description: Phair, Andrew, et al. Free-running 3D whole-heart T(1) and T(2) mapping and cine MRI using low-rank reconstruction with non-rigid cardiac motion correction. ''Magn Reson Med''. 2023 Jan; '''89''' (1):217-232 | |
| Effects of bolus injection duration on perfusion estimates in dynamic CT and dynamic susceptibility contrast MRI. Description: Arvidsson, Jonathan, et al. Effects of bolus injection duration on perfusion estimates in dynamic CT and dynamic susceptibility contrast MRI. ''MAGMA''. 2023 Feb; '''36''' (1):95-106 | |
| Relationship between paramagnetic rim lesions and slowly expanding lesions in multiple sclerosis. Description: Calvi, Alberto, et al. Relationship between paramagnetic rim lesions and slowly expanding lesions in multiple sclerosis. ''Mult Scler''. 2023 Mar; '''29''' (3):352-362 | |
| Single-heartbeat cardiac cine imaging via jointly regularized nonrigid motion-corrected reconstruction. Description: Cruz, Gastao, et al. Single-heartbeat cardiac cine imaging via jointly regularized nonrigid motion-corrected reconstruction. ''NMR Biomed''. 2023 Mar 30; '''36''' (9):e4942 | |
| Aberrant olfactory network functional connectivity in people with olfactory dysfunction following COVID-19 infection: an exploratory, observational study. Description: Wingrove, Jed, et al. Aberrant olfactory network functional connectivity in people with olfactory dysfunction following COVID-19 infection: an exploratory, observational study. ''EClinicalMedicine''. 2023 Apr; '''58''': 101883 | |
| Frequency-specific gaze modulation of emotional face processing in the human amygdala. Description: Guex, Raphael, et al. Frequency-specific gaze modulation of emotional face processing in the human amygdala. ''Cereb Cortex''. 2023 Apr 4; '''33''' (8):4859-4869 | |
| Feasibility of in vivo multi-parametric quantitative magnetic resonance imaging of the healthy sciatic nerve with a unified signal readout protocol. Description: Boonsuth, Ratthaporn, et al. Feasibility of in vivo multi-parametric quantitative magnetic resonance imaging of the healthy sciatic nerve with a unified signal readout protocol. ''Sci Rep''. 2023 Apr 21; '''13''' (1):6565 | |
| A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI. Description: Iglesias, Juan Eugenio. A ready-to-use machine learning tool for symmetric multi-modality registration of brain MRI. ''Sci Rep''. 2023 Apr 24; '''13''' (1):6657 | |
| Whole-brain diffusion tensor imaging predicts 6-month functional outcome in acute intracerebral haemorrhage. Description: Schwarz, G, et al. Whole-brain diffusion tensor imaging predicts 6-month functional outcome in acute intracerebral haemorrhage. ''J Neurol''. 2023 May; '''270''' (5):2640-2648 | |
| Extensive T1-weighted MRI Preprocessing Improves Generalizability of Deep Brain Age Prediction Models. Description: Dular, Lara, et al. Extensive T1-weighted MRI Preprocessing Improves Generalizability of Deep Brain Age Prediction Models. ''bioRxiv''. 2023 May 10; | |
| Tau accumulation in autosomal dominant Alzheimer's disease: a longitudinal [(18)F]flortaucipir study. Description: O'Connor, Antoinette, et al. Tau accumulation in autosomal dominant Alzheimer's disease: a longitudinal [(18)F]flortaucipir study. ''Alzheimers Res Ther''. 2023 May 25; '''15''' (1):99 | |
| Image guidance and interfractional anatomical variation in paediatric abdominal radiotherapy. Description: Taylor, Sabrina, et al. Image guidance and interfractional anatomical variation in paediatric abdominal radiotherapy. ''Br J Radiol''. 2023 Jun 1; '''96''' (1146):20230058 | |
| Isotoxic dose escalated radiotherapy for glioblastoma based on diffusion-weighted MRI and tumor control probability-an in-silico study. Description: Pang, Yaru, et al. Isotoxic dose escalated radiotherapy for glioblastoma based on diffusion-weighted MRI and tumor control probability-an in-silico study. ''Br J Radiol''. 2023 Jun 1; '''96''' (1146):20220384 | |
| Assessing informative tract segmentation and nTMS for pre-operative planning. Description: Lucena, Oeslle, et al. Assessing informative tract segmentation and nTMS for pre-operative planning. ''J Neurosci Methods''. 2023 Aug 1; '''396''': 109933 | |
| Extent of piriform cortex resection in children with temporal lobe epilepsy. Description: Piper, Rory J, et al. Extent of piriform cortex resection in children with temporal lobe epilepsy. ''Ann Clin Transl Neurol''. 2023 Sep; '''10''' (9):1613-1622 | |
| Subregional analysis of striatum iron in Parkinson's disease and rapid eye movement sleep behaviour disorder. Description: Alushaj, Erind, et al. Subregional analysis of striatum iron in Parkinson's disease and rapid eye movement sleep behaviour disorder. ''Neuroimage Clin''. 2023 Sep 28; '''40''': 103519 | |
| Quantitative susceptibility mapping identifies hippocampal and other subcortical grey matter tissue composition changes in temporal lobe epilepsy. Description: Kiersnowski, Oliver C, et al. Quantitative susceptibility mapping identifies hippocampal and other subcortical grey matter tissue composition changes in temporal lobe epilepsy. ''Hum Brain Mapp''. 2023 Oct 15; '''44''' (15):5047-5064 | |
| Diffusion MRI of the facial-vestibulocochlear nerve complex: a prospective clinical validation study. Description: Shapey, Jonathan, et al. Diffusion MRI of the facial-vestibulocochlear nerve complex: a prospective clinical validation study. ''Eur Radiol''. 2023 Nov; '''33''' (11):8067-8076 | |
| Quantitative magnetic resonance imaging reflects different levels of histologically determined myelin densities in multiple sclerosis, including remyelination in inactive multiple sclerosis lesions. Description: Wiggermann, Vanessa, et al. Quantitative magnetic resonance imaging reflects different levels of histologically determined myelin densities in multiple sclerosis, including remyelination in inactive multiple sclerosis lesions. ''Brain Pathol''. 2023 Nov; '''33''' (6):e13150 | |
| Unsupervised deep learning registration model for multimodal brain images. Description: Abbasi, Samaneh, et al. Unsupervised deep learning registration model for multimodal brain images. ''J Appl Clin Med Phys''. 2023 Nov; '''24''' (11):e14177 | |
| Subject-Specific Automatic Reconstruction of White Matter Tracts. Description: Meesters, Stephan, et al. Subject-Specific Automatic Reconstruction of White Matter Tracts. ''J Digit Imaging''. 2023 Dec; '''36''' (6):2648-2661 | |
| Three-dimensional histology reveals dissociable human hippocampal long axis gradients of Alzheimer's pathology. Description: Ortega-Cruz, Diana, et al. Three-dimensional histology reveals dissociable human hippocampal long axis gradients of Alzheimer's pathology. ''bioRxiv''. 2023 Dec 7; | |
| Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI. Description: Kujawa, Aaron, et al. Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI. ''Front Comput Neurosci''. 2024; '''18''': 1365727 | |
| Sex and age effects on gray matter volume trajectories in young children with prenatal alcohol exposure. Description: Long, Madison, et al. Sex and age effects on gray matter volume trajectories in young children with prenatal alcohol exposure. ''Front Hum Neurosci''. 2024; '''18''': 1379959 | |
| Similarity-driven motion-resolved reconstruction for ferumoxytol-enhanced whole-heart MRI in congenital heart disease. Description: Romanin, Ludovica, et al. Similarity-driven motion-resolved reconstruction for ferumoxytol-enhanced whole-heart MRI in congenital heart disease. ''PLoS One''. 2024; '''19''' (6):e0304612 | |
| Treatment reduces the incidence of newly appearing multiple sclerosis lesions evolving into chronic active, slowly expanding lesions: A retrospective analysis. Description: Calvi, Alberto, et al. Treatment reduces the incidence of newly appearing multiple sclerosis lesions evolving into chronic active, slowly expanding lesions: A retrospective analysis. ''Eur J Neurol''. 2024 Jan; '''31''' (1):e16092 | |
| Respiratory motion modelling for MR-guided lung cancer radiotherapy: model development and geometric accuracy evaluation. Description: Eiben, Bjorn, et al. Respiratory motion modelling for MR-guided lung cancer radiotherapy: model development and geometric accuracy evaluation. ''Phys Med Biol''. 2024 Feb 19; '''69''' (5): | |
| Independent component analysis (ICA) applied to dynamic oxygen-enhanced MRI (OE-MRI) for robust functional lung imaging at 3 T. Description: Needleman, Sarah H, et al. Independent component analysis (ICA) applied to dynamic oxygen-enhanced MRI (OE-MRI) for robust functional lung imaging at 3 T. ''Magn Reson Med''. 2024 Mar; '''91''' (3):955-971 | |
| Individualized white matter connectivity of the articulatory pathway: An ultra-high field study. Description: Lankinen, Kaisu, et al. Individualized white matter connectivity of the articulatory pathway: An ultra-high field study. ''Brain Lang''. 2024 Mar; '''250''': 105391 | |
| Photoreceptor Integrity in MEWDS: Longitudinal Structure-Function Correlations. Description: Cicinelli, Maria Vittoria, et al. Photoreceptor Integrity in MEWDS: Longitudinal Structure-Function Correlations. ''Invest Ophthalmol Vis Sci''. 2024 Apr 1; '''65''' (4):28 | |
| Three-dimensional histology reveals dissociable human hippocampal long-axis gradients of Alzheimer's pathology. Description: Ortega-Cruz, Diana, et al. Three-dimensional histology reveals dissociable human hippocampal long-axis gradients of Alzheimer's pathology. ''Alzheimers Dement''. 2024 Apr; '''20''' (4):2606-2619 | |
| Impact of amyloid and tau positivity on longitudinal brain atrophy in cognitively normal individuals. Description: Fujishima, Motonobu, et al. Impact of amyloid and tau positivity on longitudinal brain atrophy in cognitively normal individuals. ''Alzheimers Res Ther''. 2024 Apr 10; '''16''' (1):77 | |
| Regional nigral neuromelanin degeneration in asymptomatic leucine-rich repeat kinase 2 gene carrier using MRI. Description: Gao, Linlin, et al. Regional nigral neuromelanin degeneration in asymptomatic leucine-rich repeat kinase 2 gene carrier using MRI. ''Sci Rep''. 2024 May 9; '''14''' (1):10621 | |
| Improving explanation of motor disability with diffusion-based graph metrics at onset of the first demyelinating event. Description: Foster, Michael A, et al. Improving explanation of motor disability with diffusion-based graph metrics at onset of the first demyelinating event. ''Mult Scler''. 2024 Jun; '''30''' (7):800-811 | |
| Data-Driven Analysis Reveals Cortical Infarction Patterns Correlated With Inflammation and Prognosis: A Retrospective, Multicenter Cohort Study. Description: Wang, Wen-Jie, et al. Data-Driven Analysis Reveals Cortical Infarction Patterns Correlated With Inflammation and Prognosis: A Retrospective, Multicenter Cohort Study. ''J Am Heart Assoc''. 2024 Jun 18; '''13''' (12):e033616 | |
| Predicting Cognitive Functioning for Patients with a High-Grade Glioma: Evaluating Different Representations of Tumor Location in a Common Space. Description: Boelders, S M, et al. Predicting Cognitive Functioning for Patients with a High-Grade Glioma: Evaluating Different Representations of Tumor Location in a Common Space. ''Neuroinformatics''. 2024 Jul; '''22''' (3):329-352 | |
| A machine-learning regional clustering approach to understand ventilator-induced lung injury: a proof-of-concept experimental study. Description: Cruces, Pablo, et al. A machine-learning regional clustering approach to understand ventilator-induced lung injury: a proof-of-concept experimental study. ''Intensive Care Med Exp''. 2024 Jul 2; '''12''' (1):60 | |
| A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentation. Description: Casamitjana, Adria, et al. A next-generation, histological atlas of the human brain and its application to automated brain MRI segmentation. ''bioRxiv''. 2024 Sep 6; | |
| Resolving spatial response heterogeneity in glioblastoma. Description: Ziegenfeuter, Julian, et al. Resolving spatial response heterogeneity in glioblastoma. ''Eur J Nucl Med Mol Imaging''. 2024 Oct; '''51''' (12):3685-3695 | |
| Structure-function coupling changes in first-episode, treatment-naive schizophrenia correlate with cell type-specific transcriptional signature. Description: Yao, Guanqun, et al. Structure-function coupling changes in first-episode, treatment-naive schizophrenia correlate with cell type-specific transcriptional signature. ''BMC Med''. 2024 Oct 23; '''22''' (1):491 | |
| Portable, low-field magnetic resonance imaging for evaluation of Alzheimer's disease. Description: Sorby-Adams, Annabel J, et al. Portable, low-field magnetic resonance imaging for evaluation of Alzheimer's disease. ''Nat Commun''. 2024 Dec 2; '''15''' (1):10488 | |
| Advanced imaging reveals enhanced malignancy in glioblastomas involving the subventricular zone: evidence of increased infiltrative growth and perfusion. Description: Griessmair, Michael, et al. Advanced imaging reveals enhanced malignancy in glioblastomas involving the subventricular zone: evidence of increased infiltrative growth and perfusion. ''J Neurooncol''. 2025 Jan; '''171''' (2):343-350 | |
| An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain. Description: Piluso, Sebastien, et al. An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain. ''Imaging Neurosci (Camb)''. 2025; '''3''': | |
| Assessing the consistency of CT-based ventilation imaging under noise reduction processing with simulated quantum noise using a nonrigid alveoli phantom. Description: Miyakawa, Shin, et al. Assessing the consistency of CT-based ventilation imaging under noise reduction processing with simulated quantum noise using a nonrigid alveoli phantom. ''Front Radiol''. 2025; '''5''': 1567267 | |
| Automatic brain quantification in children with unilateral cerebral palsy. Description: Simarro, Jaime, et al. Automatic brain quantification in children with unilateral cerebral palsy. ''Front Neurosci''. 2025; '''19''': 1540480 | |
| Comparative evaluation of image registration techniques in functional ultrasound imaging. Description: Zhong, Shan, et al. Comparative evaluation of image registration techniques in functional ultrasound imaging. ''Imaging Neurosci (Camb)''. 2025; '''3''': | |
| Computer-assisted stereoelectroencephalography planning: center-specific priors enhance planning. Description: Dasgupta, Debayan, et al. Computer-assisted stereoelectroencephalography planning: center-specific priors enhance planning. ''Front Neurol''. 2025; '''16''': 1514442 | |
| Convolutional neural network using magnetic resonance brain imaging to predict outcome from tuberculosis meningitis. Description: Dong, Trinh Huu Khanh, et al. Convolutional neural network using magnetic resonance brain imaging to predict outcome from tuberculosis meningitis. ''PLoS One''. 2025; '''20''' (5):e0321655 | |
| Development and evaluation of customized software to automatically align macula and optic disc centered scanning laser ophthalmoscope fundus images. Description: Martinez-Perez, M Elena, et al. Development and evaluation of customized software to automatically align macula and optic disc centered scanning laser ophthalmoscope fundus images. ''PeerJ Comput Sci''. 2025; '''11''': e2621 | |
| Harmonization of diffusion MRI on healthy subjects using NeuroCombat and LongCombat: a B-Q MINDED brain intra- and inter-scanner study. Description: Pinto, Maira Siqueira, et al. Harmonization of diffusion MRI on healthy subjects using NeuroCombat and LongCombat: a B-Q MINDED brain intra- and inter-scanner study. ''Front Neurosci''. 2025; '''19''': 1591169 | |
| Inhibition abilities and functional brain connectivity in school-aged term-born and preterm-born children. Description: Disselhoff, Vera, et al. Inhibition abilities and functional brain connectivity in school-aged term-born and preterm-born children. ''Pediatr Res''. 2025 Jan; '''97''' (1):315-324 | |
| Longitudinal neuromelanin changes in prodromal and early Parkinson's disease in humans and rat model. Description: Perot, Jean-Baptiste, et al. Longitudinal neuromelanin changes in prodromal and early Parkinson's disease in humans and rat model. ''Brain Commun''. 2025; '''7''' (3):fcaf204 | |
| Substantia nigra degeneration in spinocerebellar ataxia 2 and 7 using neuromelanin-sensitive imaging. Description: Chougar, Lydia, et al. Substantia nigra degeneration in spinocerebellar ataxia 2 and 7 using neuromelanin-sensitive imaging. ''Eur J Neurol''. 2025 Jan; '''32''' (1):e70035 | |
| T(2) contrast variation in human brain at 7 T and its potential contributors. Description: Wang, Yicun, et al. T(2) contrast variation in human brain at 7 T and its potential contributors. ''Imaging Neurosci (Camb)''. 2025; '''3''': | |
| Spatial integration of multi-omics data from serial sections using the novel Multi-Omics Imaging Integration Toolset. Description: Wess, Maximilian, et al. Spatial integration of multi-omics data from serial sections using the novel Multi-Omics Imaging Integration Toolset. ''Gigascience''. 2025 Jan 6; '''14''': | |
| Explaining cognitive function in multiple sclerosis through networks of grey and white matter features: a joint independent component analysis. Description: Lageman, Senne B, et al. Explaining cognitive function in multiple sclerosis through networks of grey and white matter features: a joint independent component analysis. ''J Neurol''. 2025 Jan 15; '''272''' (2):142 | |
| Evaluation of magnetic resonance spectroscopy total sodium concentration measures, and associations with microstructure and physical impairment in cervical myelopathy. Description: Solanky, Bhavana S, et al. Evaluation of magnetic resonance spectroscopy total sodium concentration measures, and associations with microstructure and physical impairment in cervical myelopathy. ''Sci Rep''. 2025 Feb 27; '''15''' (1):7014 | |
| Comparing methods to improve cone-beam computed tomography for dose calculations in adaptive proton therapy. Description: Vestergaard, Casper Dueholm, et al. Comparing methods to improve cone-beam computed tomography for dose calculations in adaptive proton therapy. ''Phys Imaging Radiat Oncol''. 2025 Apr; '''34''': 100784 | |
| Midbrain and pallidal iron changes identify patients with REM sleep behaviour disorder and Parkinson's disease. Description: Alushaj, Erind, et al. Midbrain and pallidal iron changes identify patients with REM sleep behaviour disorder and Parkinson's disease. ''NPJ Parkinsons Dis''. 2025 Apr 23; '''11''' (1):84 | |
| CPAP improves regional lung strain rate and diaphragm velocity of relaxation in experimental self-inflicted lung injury. Description: Perez, Agustin, et al. CPAP improves regional lung strain rate and diaphragm velocity of relaxation in experimental self-inflicted lung injury. ''Crit Care''. 2025 Jul 24; '''29''' (1):322 | |
| Evaluating machine learning models for post-surgery treatment response assessment in glioblastoma multiforme: a comparative study of gray level co-occurrence matrix (GLCM), curvelet, and combined radiomics features selected by multiple algorithms. Description: Alibabaei, Sanaz, et al. Evaluating machine learning models for post-surgery treatment response assessment in glioblastoma multiforme: a comparative study of gray level co-occurrence matrix (GLCM), curvelet, and combined radiomics features selected by multiple algorithms. ''BMC Med Imaging''. 2025 Sep 1; '''25''' (1):362 | |
| Sex-specific relationships between gray matter volume and executive function in young children with and without prenatal alcohol exposure. Description: Long, Madison, et al. Sex-specific relationships between gray matter volume and executive function in young children with and without prenatal alcohol exposure. ''Dev Cogn Neurosci''. 2025 Oct; '''75''': 101608 | |
| An Automated Analysis Tool for Diffusion Tensor Imaging-Based Quantitative MRI in X-Linked Adrenoleukodystrophy. Description: Kabak, Eda G, et al. An Automated Analysis Tool for Diffusion Tensor Imaging-Based Quantitative MRI in X-Linked Adrenoleukodystrophy. ''J Inherit Metab Dis''. 2025 Nov; '''48''' (6):e70108 |