The links below are to publications on PubMed referring to BioImage Suite. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.

Publication/References
Cluster failure or power failure? Evaluating sensitivity in cluster-level inference.
Description: Noble, Stephanie, et al. Cluster failure or power failure? Evaluating sensitivity in cluster-level inference. ''Neuroimage''. 2020 Apr 1; '''209''': 116468
Dynamic functional connectivity analysis based on time-varying partial correlation with a copula-DCC-GARCH model.
Description: Lee, Namgil, et al. Dynamic functional connectivity analysis based on time-varying partial correlation with a copula-DCC-GARCH model. ''Neurosci Res''. 2021 Aug; '''169''': 27-39
Unsupervised learning of brain state dynamics during emotion imagination using high-density EEG.
Description: Hsu, Sheng-Hsiou, et al. Unsupervised learning of brain state dynamics during emotion imagination using high-density EEG. ''Neuroimage''. 2022 Apr 1; '''249''': 118873
In Vitro High-Throughput Genotoxicity Testing Using gammaH2AX Biomarker, Microscopy and Reproducible Automatic Image Analysis in ImageJ-A Pilot Study with Valinomycin.
Description: Krizkovska, Bara, et al. In Vitro High-Throughput Genotoxicity Testing Using gammaH2AX Biomarker, Microscopy and Reproducible Automatic Image Analysis in ImageJ-A Pilot Study with Valinomycin. ''Toxins (Basel)''. 2023 Apr 1; '''15''' (4):
Sex-based structural and functional MRI outcomes in the rat brain after soman (GD) exposure-induced status epilepticus.
Description: Gage, Meghan, et al. Sex-based structural and functional MRI outcomes in the rat brain after soman (GD) exposure-induced status epilepticus. ''Epilepsia Open''. 2023 Jun; '''8''' (2):399-410
Domain-general and domain-specific functional networks of Broca's area underlying language processing.
Description: Bulut, Talat. Domain-general and domain-specific functional networks of Broca's area underlying language processing. ''Brain Behav''. 2023 Jul; '''13''' (7):e3046
Developmental trajectories of the default mode, frontoparietal, and salience networks from the third trimester through the newborn period.
Description: Scheinost, Dustin, et al. Developmental trajectories of the default mode, frontoparietal, and salience networks from the third trimester through the newborn period. ''Imaging Neurosci (Camb)''. 2024; '''2''':
Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization.
Description: Vafaii, Hadi, et al. Multimodal measures of spontaneous brain activity reveal both common and divergent patterns of cortical functional organization. ''Nat Commun''. 2024 Jan 3; '''15''' (1):229
Brain-phenotype predictions can survive across diverse real-world data.
Description: Adkinson, Brendan D, et al. Brain-phenotype predictions can survive across diverse real-world data. ''bioRxiv''. 2024 Jan 24;
Data leakage inflates prediction performance in connectome-based machine learning models.
Description: Rosenblatt, Matthew, et al. Data leakage inflates prediction performance in connectome-based machine learning models. ''Nat Commun''. 2024 Feb 28; '''15''' (1):1829
VEGF-C prophylaxis favors lymphatic drainage and modulates neuroinflammation in a stroke model.
Description: Boisserand, Ligia Simoes Braga, et al. VEGF-C prophylaxis favors lymphatic drainage and modulates neuroinflammation in a stroke model. ''J Exp Med''. 2024 Apr 1; '''221''' (4):
Semantic associative abilities and executive control functions predict novelty and appropriateness of idea generation.
Description: Wang, Xueyang, et al. Semantic associative abilities and executive control functions predict novelty and appropriateness of idea generation. ''Commun Biol''. 2024 Jun 7; '''7''' (1):703
Predicting creative behavior using resting-state electroencephalography.
Description: Chhade, Fatima, et al. Predicting creative behavior using resting-state electroencephalography. ''Commun Biol''. 2024 Jun 29; '''7''' (1):790
Brain age prediction and deviations from normative trajectories in the neonatal connectome.
Description: Sun, Huili, et al. Brain age prediction and deviations from normative trajectories in the neonatal connectome. ''Nat Commun''. 2024 Nov 26; '''15''' (1):10251
A taxonomic guide to diffusion MRI tractography visualization tools.
Description: Laamoumi, Miriam, et al. A taxonomic guide to diffusion MRI tractography visualization tools. ''NMR Biomed''. 2025 Jan; '''38''' (1):e5267
Medulla oblongata dominated synaptic density network degeneration in amyotrophic lateral sclerosis.
Description: Zou, Ting, et al. Medulla oblongata dominated synaptic density network degeneration in amyotrophic lateral sclerosis. ''Neuroimage Clin''. 2025; '''47''': 103814
Decoding the physics of observed actions in the human brain.
Description: Wurm, Moritz F, et al. Decoding the physics of observed actions in the human brain. ''Elife''. 2025 Feb 10; '''13''':
Impact of liver-specific survival motor neuron (SMN) depletion on central nervous system and peripheral tissue pathology.
Description: de Almeida, Monique Marylin Alves, et al. Impact of liver-specific survival motor neuron (SMN) depletion on central nervous system and peripheral tissue pathology. ''Elife''. 2025 Feb 20; '''13''':
Exploring the neural mechanisms underlying cooperation and competition behavior: Insights from stereo-electroencephalography hyperscanning.
Description: Qiao, Xiaojun, et al. Exploring the neural mechanisms underlying cooperation and competition behavior: Insights from stereo-electroencephalography hyperscanning. ''iScience''. 2025 Feb 21; '''28''' (2):111506
Fast face-selective responses in prefrontal face patches of the macaque.
Description: Mergan, Eline, et al. Fast face-selective responses in prefrontal face patches of the macaque. ''Cell Rep''. 2025 Mar 25; '''44''' (3):115389
Dynamic prefrontal coupling coordinates adaptive decision-making.
Description: Yan, Xinyuan, et al. Dynamic prefrontal coupling coordinates adaptive decision-making. ''Res Sq''. 2025 Apr 9;
Multimodal identification of the mouse brain using simultaneous Ca(2+) imaging and fMRI.
Description: Mandino, Francesca, et al. Multimodal identification of the mouse brain using simultaneous Ca(2+) imaging and fMRI. ''Commun Biol''. 2025 Apr 26; '''8''' (1):665
The relationship between the APOE genotypes and memory performance of young adults and its neural basis.
Description: Li, Ling, et al. The relationship between the APOE genotypes and memory performance of young adults and its neural basis. ''Sci Rep''. 2025 Jul 11; '''15''' (1):25150
Do in-scanner tasks outperform rest for predicting autistic traits using functional connectivity data?
Description: Horien, Corey, et al. Do in-scanner tasks outperform rest for predicting autistic traits using functional connectivity data? ''medRxiv''. 2025 Dec 3;