The links below are to publications on PubMed referring to QuickNII - Serial section aligner to volumetric atlases. This list is gathered weekly from PubMed automatically.

Publication/References
Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging.
Description: Osen, Kirsten K, et al. Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion tensor magnetic resonance imaging. ''Neuroimage''. 2019 Oct 1; '''199''': 38-56
Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model.
Description: Gurdon, Brianna, et al. Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model. ''bioRxiv''. 2023 Feb 28;
A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia.
Description: Blixhavn, Camilla H, et al. A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. ''Sci Data''. 2023 Mar 21; '''10''' (1):150
Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus.
Description: Dorman, Reinder, et al. Spike-based coupling between single neurons and populations across rat sensory cortices, perirhinal cortex, and hippocampus. ''Cereb Cortex''. 2023 Jun 20; '''33''' (13):8247-8264
The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain.
Description: Reiten, Ingrid, et al. The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain. ''Sci Data''. 2023 Sep 21; '''10''' (1):645
The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases.
Description: Blixhavn, Camilla H, et al. The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. ''Front Neuroinform''. 2024; '''18''': 1284107
Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex.
Description: Fiorilli, Julien, et al. Neural correlates of object identity and reward outcome in the sensory cortical-hippocampal hierarchy: coding of motivational information in perirhinal cortex. ''Cereb Cortex''. 2024 Jan 31; '''34''' (2):
Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology.
Description: Goralski, Thomas M, et al. Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology. ''Nat Commun''. 2024 Mar 26; '''15''' (1):2642