PubMed Mentions
The links below are to publications on PubMed referring to BluePyOpt. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.
| Publication/References | |
| Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits. Description: Yao, Heng Kang, et al. Reduced inhibition in depression impairs stimulus processing in human cortical microcircuits. ''Cell Rep''. 2022 Jan 11; '''38''' (2):110232 | |
| Multi-modal characterization and simulation of human epileptic circuitry. Description: Buchin, Anatoly, et al. Multi-modal characterization and simulation of human epileptic circuitry. ''Cell Rep''. 2022 Dec 27; '''41''' (13):111873 | |
| Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. Description: Dainauskas, Justinas J, et al. Altered synaptic plasticity at hippocampal CA1-CA3 synapses in Alzheimer's disease: integration of amyloid precursor protein intracellular domain and amyloid beta effects into computational models. ''Front Comput Neurosci''. 2023; '''17''': 1305169 | |
| Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex. Description: Hunt, Sarah, et al. Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex. ''Cereb Cortex''. 2023 Mar 10; '''33''' (6):2857-2878 | |
| Modeling Synaptic Integration of Bursty and beta Oscillatory Inputs in Ventromedial Motor Thalamic Neurons in Normal and Parkinsonian States. Description: Cavarretta, Francesco, et al. Modeling Synaptic Integration of Bursty and beta Oscillatory Inputs in Ventromedial Motor Thalamic Neurons in Normal and Parkinsonian States. ''eNeuro''. 2023 Dec; '''10''' (12): | |
| Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. Description: Masoli, Stefano, et al. Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. ''Commun Biol''. 2024 Jan 2; '''7''' (1):5 | |
| A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Description: Clatot, Jerome, et al. A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. ''Proc Natl Acad Sci U S A''. 2024 Jan 16; '''121''' (3):e2307776121 | |
| Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. Description: Romani, Armando, et al. Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region. ''PLoS Biol''. 2024 Nov; '''22''' (11):e3002861 | |
| Evaluation and comparison of methods for neuronal parameter optimization using the Neuroptimus software framework. Description: Mohacsi, Mate, et al. Evaluation and comparison of methods for neuronal parameter optimization using the Neuroptimus software framework. ''PLoS Comput Biol''. 2024 Dec; '''20''' (12):e1012039 | |
| Regulation of sharp wave-ripples by cholecystokinin-expressing interneurons and parvalbumin-expressing basket cells in the hippocampal CA3 region. Description: Yang, Yuchen, et al. Regulation of sharp wave-ripples by cholecystokinin-expressing interneurons and parvalbumin-expressing basket cells in the hippocampal CA3 region. ''Front Comput Neurosci''. 2025; '''19''': 1591003 | |
| A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers. Description: Farina, Sofia, et al. A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers. ''PLoS Comput Biol''. 2025 May; '''21''' (5):e1013070 | |
| Persistent Adaptation through Dual-Timescale Regulation of Ion Channel Properties. Description: Mondal, Yugarshi, et al. Persistent Adaptation through Dual-Timescale Regulation of Ion Channel Properties. ''bioRxiv''. 2025 Oct 23; |