Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1002289
2
MRIcron
980339
3
BIDScoin
735377
4
ITK-SNAP
469139
5
FCP/INDI PRIVATE SITE
386002
6
IIT Human Brain Atlas (v.5.0)
225838
7
fMRI-CPCA
207359
8
MRIcroGL
206304
9
CONN : functional connectivity toolbox
206293
10
1000 Functional Connectomes Project
184082
11
BrainNet Viewer
121123
12
DTI-TK
97259
13
BXH/XCEDE Tools
91211
14
NIDB - Neuroinformatics Database
88427
15
IBSR
82211
16
BioImage Suite
81179
17
age-ility
80875
18
Multi-Modal MRI Reproducibility Resource
76655
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
73259
20
Solar Eclipse Imaging Genetics tools
69277
21
WFU_PickAtlas
66695
22
JIST: Java Image Science Toolkit
66623
23
BrainFlow
63386
24
GIFTI
54694
25
PANDA: a pipeline tool for diffusion MRI
53427
26
NITRC Computational Environment (NITRC-CE)
51759
27
The Neuro Bureau
51396
28
3T DWI test-retest reliability dataset
47577
29
Functional Imaging BIRN
47310
30
TOADS-CRUISE Brain Segmentation Tools
42308
31
fNIRS Data Analysis Environment
41919
32
Multimodal Visual Consciousness Study Dataset
40745
33
EEGLAB
40074
34
Generalized PPI Toolbox
39479
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
37032
37
BrainMap Database
36656
38
Network-Based Statistic (NBS)
35188
39
MIITRA atlas
34258
40
NeuroImaging Analysis Kit (NIAK)
32952
41
UNC 0-1-2 Infant Atlases
32007
42
Brain Biomechanics Imaging Resources
30895
43
Homer2
29650
44
DWI/DTI Quality Control Tool: DTIPrep
27554
45
NeuroDebian
27399
46
TumorSim
27308
47
Anima
26908
48
NYU CSC TestRetest
26793
49
BrainVisa Morphologist extensions
26733
50
Graph Theory GLM (GTG) MATLAB Toolbox
26099
51
XNAT Extras
24936
52
Melbourne Subcortex Atlas
24035
53
CBS High-Res Brain Processing Tools
23778
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
23563
55
4D UNC Neonatal and Infant Cortical Surface Atlases
23019
56
Neuroimaging Made Easy Blog
22562
57
SPHARM-PDM Toolbox
22067
58
SRI24 Atlas: Normal Adult Brain Anatomy
20346
59
BrainMask Volume Processing Tool
19725
60
Data Format Tools
19465
61
Mango
19414
62
Vaa3D and Vaa3D-Neuron
19265
63
Fast Nonlocal Means for MRI denoising
19252
64
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19126
65
CANDI Neuroimaging Access Point
19006
66
Surf Ice
18877
67
Automatic Registration Toolbox
18630
68
MITK Diffusion
18338
69
Group ICA Toolbox (GIFT and EEGIFT)
18025
70
GRETNA
17622
71
3DSlicerLupusLesionModule
17539
72
Talairach Daemon
17110
73
Subject Order-Independent Group ICA
16942
74
Awake Rat rsfMRI Database
16888
75
Diffusion Toolkit / TrackVis
16674
76
DCP：Diffusion Connectome Pipeline
16634
77
Spatially Constrained Parcellation
16425
78
MRtrix
16420
79
Freesurfer fsaverage
16278
80
3D Slicer
16259
81
ShapePopulationViewer
16233
82
Computational Morphometry Toolkit (CMTK)
16212
83
BrainSuite
16084
84
Hammer And WML Modules for 3D Slicer
15979
85
Human Imaging Database (HID)
15911
86
ENIGMA-DTI pipeline
15463
87
AutoSeg
15228
88
MARS (Multi-Atlas Robust Segmentation)
14596
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14550
90
FSL
14267
91
Brainstorm
13844
92
Artifact Detection Tools (ART)
13570
93
ANDA
13472
94
dcm2nii
13246
95
libminc - Medical Image NetCDF library
12878
96
Nighres
12872
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12768
98
NeuroDOT
12736
99
ABSORB for groupwise registration
12635
100
Maps4Mipav (Exploratory JIST)
12609