Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871551
2
Nilearn
517538
3
ITK-SNAP
419499
4
FCP/INDI PRIVATE SITE
294125
5
1000 Functional Connectomes Project
173100
6
IIT Human Brain Atlas (v.5.0)
160421
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
151271
9
BIDScoin
144827
10
DTI-TK
89049
11
BrainNet Viewer
87631
12
fMRI-CPCA
73896
13
IBSR
72105
14
Multi-Modal MRI Reproducibility Resource
62711
15
WFU_PickAtlas
60236
16
BioImage Suite
59020
17
age-ility
52756
18
BXH/XCEDE Tools
48830
19
Solar Eclipse Imaging Genetics tools
42948
20
PANDA: a pipeline tool for diffusion MRI
42657
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41789
22
JIST: Java Image Science Toolkit
40966
23
EEGLAB
39822
24
The Neuro Bureau
39495
25
FreeSurfer
37846
26
GIFTI
37246
27
TOADS-CRUISE Brain Segmentation Tools
36661
28
NIDB - Neuroinformatics Database
36480
29
fNIRS Data Analysis Environment
34595
30
Functional Imaging BIRN
34565
31
3T DWI test-retest reliability dataset
31824
32
Generalized PPI Toolbox
31733
33
NITRC Computational Environment (NITRC-CE)
31467
34
BrainMap Database
26629
35
Homer2
23829
36
NeuroDebian
22809
37
Network-Based Statistic (NBS)
22047
38
Anima
22023
39
BrainVisa Morphologist extensions
21940
40
NYU CSC TestRetest
20527
41
UNC 0-1-2 Infant Atlases
20147
42
XNAT Extras
18829
43
Mango
17859
44
BrainFlow
17390
45
MITK Diffusion
17373
46
Brain Biomechanics Imaging Resources
16571
47
Neuroimaging Made Easy Blog
16460
48
QuickNII - Serial section aligner to volumetric atlases
16234
49
Automatic Registration Toolbox
16069
50
Data Format Tools
15634
51
GRETNA
15460
52
Multimodal Visual Consciousness Study Dataset
14907
53
Surf Ice
14862
54
3D Slicer
14856
55
Vaa3D and Vaa3D-Neuron
14785
56
Diffusion Toolkit / TrackVis
14584
57
Talairach Daemon
14387
58
Spatially Constrained Parcellation
14323
59
Melbourne Subcortex Atlas
14232
60
CBS High-Res Brain Processing Tools
14091
61
Freesurfer fsaverage
13975
62
Brainstorm
13574
63
SRI24 Atlas: Normal Adult Brain Anatomy
13430
64
DCP：Diffusion Connectome Pipeline
13244
65
BrainMask Volume Processing Tool
13076
66
Group ICA Toolbox (GIFT and EEGIFT)
12990
67
dcm2nii
12642
68
3DSlicerLupusLesionModule
12637
69
MRtrix
12605
70
libminc - Medical Image NetCDF library
12568
71
Computational Morphometry Toolkit (CMTK)
12276
72
BrainSuite
12155
73
FSL
12154
74
CANDI Neuroimaging Access Point
12080
75
DWI/DTI Quality Control Tool: DTIPrep
11913
76
Human Imaging Database (HID)
11737
77
Artifact Detection Tools (ART)
11642
78
TumorSim
11585
79
Subject Order-Independent Group ICA
11457
80
Hammer And WML Modules for 3D Slicer
11275
81
BrainVISA
11052
82
NeuroImaging Analysis Kit (NIAK)
10917
83
2008 MICCAI MS Lesion Segmentation Challenge
10863
84
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10771
85
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10626
86
4D UNC Neonatal and Infant Cortical Surface Atlases
10593
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10396
88
SPM for fNIRS toolbox
10062
89
NODDI Matlab Toolbox
9974
90
ENIGMA-DTI pipeline
9912
91
Source Information Flow Toolbox
9852
92
Diffusional Kurtosis Estimator
9755
93
NIfTI
9735
94
Awake Rat rsfMRI Database
9704
95
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9524
96
MARS (Multi-Atlas Robust Segmentation)
9459
97
Task Independent Fluctuations Discussion
9360
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9137
99
SPHARM-PDM Toolbox
8964
100
Robust Brain Extraction (ROBEX)
8441