Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871074
2
Nilearn
513073
3
ITK-SNAP
416770
4
FCP/INDI PRIVATE SITE
291613
5
1000 Functional Connectomes Project
172751
6
IIT Human Brain Atlas (v.5.0)
157920
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
150778
9
DTI-TK
88901
10
BIDScoin
88593
11
BrainNet Viewer
87063
12
fMRI-CPCA
73240
13
IBSR
71986
14
Multi-Modal MRI Reproducibility Resource
61701
15
WFU_PickAtlas
60090
16
BioImage Suite
58599
17
age-ility
51077
18
BXH/XCEDE Tools
47138
19
PANDA: a pipeline tool for diffusion MRI
42355
20
Solar Eclipse Imaging Genetics tools
41834
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
41086
22
JIST: Java Image Science Toolkit
40191
23
EEGLAB
39779
24
The Neuro Bureau
39461
25
FreeSurfer
37846
26
GIFTI
36699
27
TOADS-CRUISE Brain Segmentation Tools
36494
28
fNIRS Data Analysis Environment
34167
29
Functional Imaging BIRN
34050
30
NIDB - Neuroinformatics Database
32090
31
Generalized PPI Toolbox
31459
32
3T DWI test-retest reliability dataset
30648
33
NITRC Computational Environment (NITRC-CE)
30567
34
BrainMap Database
26293
35
Homer2
23788
36
NeuroDebian
22359
37
Network-Based Statistic (NBS)
21988
38
Anima
21829
39
BrainVisa Morphologist extensions
21466
40
NYU CSC TestRetest
20415
41
UNC 0-1-2 Infant Atlases
19539
42
XNAT Extras
18407
43
Mango
17720
44
MITK Diffusion
17338
45
Neuroimaging Made Easy Blog
16344
46
Brain Biomechanics Imaging Resources
16161
47
QuickNII - Serial section aligner to volumetric atlases
16016
48
Automatic Registration Toolbox
15961
49
GRETNA
15460
50
Data Format Tools
15364
51
Surf Ice
14862
52
3D Slicer
14753
53
Vaa3D and Vaa3D-Neuron
14358
54
Diffusion Toolkit / TrackVis
14310
55
Talairach Daemon
14297
56
Spatially Constrained Parcellation
14188
57
Melbourne Subcortex Atlas
14071
58
Freesurfer fsaverage
13951
59
CBS High-Res Brain Processing Tools
13726
60
Brainstorm
13574
61
SRI24 Atlas: Normal Adult Brain Anatomy
13266
62
DCP：Diffusion Connectome Pipeline
13225
63
BrainFlow
13213
64
Group ICA Toolbox (GIFT and EEGIFT)
12912
65
BrainMask Volume Processing Tool
12695
66
dcm2nii
12642
67
libminc - Medical Image NetCDF library
12568
68
MRtrix
12477
69
Multimodal Visual Consciousness Study Dataset
12283
70
Computational Morphometry Toolkit (CMTK)
12261
71
3DSlicerLupusLesionModule
12203
72
FSL
11936
73
CANDI Neuroimaging Access Point
11819
74
BrainSuite
11774
75
DWI/DTI Quality Control Tool: DTIPrep
11635
76
Artifact Detection Tools (ART)
11554
77
Human Imaging Database (HID)
11511
78
Subject Order-Independent Group ICA
11334
79
TumorSim
11321
80
Hammer And WML Modules for 3D Slicer
11024
81
BrainVISA
10977
82
2008 MICCAI MS Lesion Segmentation Challenge
10863
83
NeuroImaging Analysis Kit (NIAK)
10641
84
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10600
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10315
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10254
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
10042
88
SPM for fNIRS toolbox
9978
89
NODDI Matlab Toolbox
9974
90
Source Information Flow Toolbox
9796
91
Diffusional Kurtosis Estimator
9725
92
ENIGMA-DTI pipeline
9629
93
NIfTI
9540
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9488
95
Awake Rat rsfMRI Database
9307
96
Task Independent Fluctuations Discussion
9223
97
MARS (Multi-Atlas Robust Segmentation)
9095
98
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9077
99
SPHARM-PDM Toolbox
8789
100
Robust Brain Extraction (ROBEX)
8441