Diffusion MRI Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography
This is a diffusion-weighted MRI processing Matlab toolbox (including binaries), which can be used to:
• Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010).
• Perform Hough-transform tractography (Aganj et al, MedIA 2011).
• Visualize ODFs and tracts, and export them for further analysis.
• Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018).
• Compute and interactively visualize the connectivity matrix.
• Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014).
For short tutorials, see EXAMPLE.m and EXAMPLE_CLI.m. If available, GPUs can be used for speed-up.
• Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010).
• Perform Hough-transform tractography (Aganj et al, MedIA 2011).
• Visualize ODFs and tracts, and export them for further analysis.
• Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018).
• Compute and interactively visualize the connectivity matrix.
• Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014).
For short tutorials, see EXAMPLE.m and EXAMPLE_CLI.m. If available, GPUs can be used for speed-up.
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is from the makers of:
Image Segmentation Based on the Local Center of Mass Computation
Mid-Space-Independent and Intermediate Deformable Image Registration
Quantification of Structural Brain Connectivity via a Conductance Model
Segmentation-based Multimodal Rigid Image Registration
Tissue Thickness Estimation via Minimum Line Integrals
Wavelet-based Image Fusion
Expected Label Value (ELV) Computation for Multi-Atlas Image Soft-Segmentation
Locus Coeruleus Manual Labels for 20 HCP Subjects
Mid-Space-Independent and Intermediate Deformable Image Registration
Quantification of Structural Brain Connectivity via a Conductance Model
Segmentation-based Multimodal Rigid Image Registration
Tissue Thickness Estimation via Minimum Line Integrals
Wavelet-based Image Fusion
Expected Label Value (ELV) Computation for Multi-Atlas Image Soft-Segmentation
Locus Coeruleus Manual Labels for 20 HCP Subjects
Recent Activity - Documents
Application Publications documentation
Paper on connectivity analysis in Alzheimer's disease posted by Iman Aganj on Jan 5, 2024
Recent Activity - Forums
Welcome to Open-Discussion posted by Iman Aganj on Apr 10, 2017
Recent Activity - Files
csaodf-hough: Linux 64-bit binary release
CSAODF-HoughTract_bin_linux64.zip posted by Iman Aganj on Nov 9, 2018
csaodf-hough: Windows 64-bit binary release
CSAODF-HoughTract_bin_win64.zip posted by Iman Aganj on Nov 9, 2018