questions > dcm2niiX output has wrong dimensionality
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Aug 25, 2023  04:08 PM | Chrissy boss
dcm2niiX output has wrong dimensionality

Hi there. 


I am transforming dicom to nifti. I get following output: 


data_type INT16


dim1 256


dim2 256


dim3 186


dim4 1


datatype 4


pixdim1 1.000000


pixdim2 1.000000


pixdim3 1.000000


pixdim4 0.008136


cal_max 0.000000


cal_min 0.000000


file_type NIFTI-1+; 


but I need this dimensionality:


data_type INT16


dim1 64


dim2 64


dim3 30


dim4 196


datatype 4


pixdim1 3.437500


pixdim2 3.437500


pixdim3 5.000000


pixdim4 2.000000


cal_max 9897.000000


cal_min 0.000000


file_type NIFTI-1+


 


Can someone help me please? Thanks

Aug 25, 2023  05:08 PM | Chris Rorden
RE: dcm2niiX output has wrong dimensionality

Your question is underspecified. What tool reports the wrong dimensionality? What were the dimensions of the input DICOM? Are you running the current version of dcm2niix (v1.0.20230411) and if not does upgrading resolve your issue. Maybe you can provide the complete output of running `fslhd mynifti.nii` which would provide additional details.