PubMed Mentions
The links below are to publications on PubMed referring to Vaa3D and Vaa3D-Neuron. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.
| Publication/References | |
| Binocular Encoding in the Damselfly Pre-motor Target Tracking System. Description: Supple, Jack A, et al. Binocular Encoding in the Damselfly Pre-motor Target Tracking System. ''Curr Biol''. 2020 Feb 24; '''30''' (4):645-656.e4 | |
| Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking. Description: Iascone, Daniel Maxim, et al. Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking. ''Neuron''. 2020 May 20; '''106''' (4):566-578.e8 | |
| A Neural Basis for Categorizing Sensory Stimuli to Enhance Decision Accuracy. Description: Hu, Yujia, et al. A Neural Basis for Categorizing Sensory Stimuli to Enhance Decision Accuracy. ''Curr Biol''. 2020 Dec 21; '''30''' (24):4896-4909.e6 | |
| Model-based comparison of current flow in rod bipolar cells of healthy and early-stage degenerated retina. Description: Kosta, Pragya, et al. Model-based comparison of current flow in rod bipolar cells of healthy and early-stage degenerated retina. ''Exp Eye Res''. 2021 Jun; '''207''': 108554 | |
| C9orf72 hexanucleotide repeat expansion leads to altered neuronal and dendritic spine morphology and synaptic dysfunction. Description: Huber, Nadine, et al. C9orf72 hexanucleotide repeat expansion leads to altered neuronal and dendritic spine morphology and synaptic dysfunction. ''Neurobiol Dis''. 2022 Jan; '''162''': 105584 | |
| Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types. Description: Nandi, Anirban, et al. Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types. ''Cell Rep''. 2022 Aug 9; '''40''' (6):111176 | |
| Phloretin enhances remyelination by stimulating oligodendrocyte precursor cell differentiation. Description: Dierckx, Tess, et al. Phloretin enhances remyelination by stimulating oligodendrocyte precursor cell differentiation. ''Proc Natl Acad Sci U S A''. 2022 Nov 16; '''119''' (46):e2120393119 | |
| Impact of Retinal Degeneration on Response of ON and OFF Cone Bipolar Cells to Electrical Stimulation. Description: Farzad, Shayan, et al. Impact of Retinal Degeneration on Response of ON and OFF Cone Bipolar Cells to Electrical Stimulation. ''IEEE Trans Neural Syst Rehabil Eng''. 2023; '''31''': 2424-2437 | |
| Regional and cell-type-specific afferent and efferent projections of the mouse claustrum. Description: Wang, Quanxin, et al. Regional and cell-type-specific afferent and efferent projections of the mouse claustrum. ''Cell Rep''. 2023 Feb 28; '''42''' (2):112118 | |
| Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex. Description: Kim, Mean-Hwan, et al. Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex. ''Elife''. 2023 May 30; '''12''': | |
| Stimulus edges induce orientation tuning in superior colliculus. Description: Liang, Yajie, et al. Stimulus edges induce orientation tuning in superior colliculus. ''Nat Commun''. 2023 Aug 8; '''14''' (1):4756 | |
| Heterogeneous receptor expression underlies non-uniform peptidergic modulation of olfaction in Drosophila. Description: Sizemore, Tyler R, et al. Heterogeneous receptor expression underlies non-uniform peptidergic modulation of olfaction in Drosophila. ''Nat Commun''. 2023 Aug 30; '''14''' (1):5280 | |
| D-LMBmap: a fully automated deep-learning pipeline for whole-brain profiling of neural circuitry. Description: Li, Zhongyu, et al. D-LMBmap: a fully automated deep-learning pipeline for whole-brain profiling of neural circuitry. ''Nat Methods''. 2023 Oct; '''20''' (10):1593-1604 | |
| Increased intrinsic membrane excitability is associated with hypertrophic olivary degeneration in spinocerebellar ataxia type 1. Description: Morrison, Logan M, et al. Increased intrinsic membrane excitability is associated with hypertrophic olivary degeneration in spinocerebellar ataxia type 1. ''bioRxiv''. 2023 Oct 23; | |
| Connecting single-cell transcriptomes to projectomes in mouse visual cortex. Description: Sorensen, Staci A, et al. Connecting single-cell transcriptomes to projectomes in mouse visual cortex. ''bioRxiv''. 2023 Nov 26; | |
| Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. Description: Masoli, Stefano, et al. Human Purkinje cells outperform mouse Purkinje cells in dendritic complexity and computational capacity. ''Commun Biol''. 2024 Jan 2; '''7''' (1):5 | |
| Sensor system for analysis of biofilm sensitivity to ampicillin. Description: Guliy, Olga I, et al. Sensor system for analysis of biofilm sensitivity to ampicillin. ''Appl Microbiol Biotechnol''. 2024 Jan 24; '''108''' (1):172 | |
| Amyloid plaques and normal ageing have differential effects on microglial Ca(2+) activity in the mouse brain. Description: Izquierdo, Pablo, et al. Amyloid plaques and normal ageing have differential effects on microglial Ca(2+) activity in the mouse brain. ''Pflugers Arch''. 2024 Feb; '''476''' (2):257-270 | |
| Transcriptional control of visual neural circuit development by GS homeobox 1. Description: Schmidt, Alexandra R, et al. Transcriptional control of visual neural circuit development by GS homeobox 1. ''PLoS Genet''. 2024 Apr; '''20''' (4):e1011139 | |
| Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference. Description: Checcucci, Curzio, et al. Deep learning-based localization algorithms on fluorescence human brain 3D reconstruction: a comparative study using stereology as a reference. ''Sci Rep''. 2024 Jun 25; '''14''' (1):14629 | |
| Collaborative augmented reconstruction of 3D neuron morphology in mouse and human brains. Description: Zhang, Lingli, et al. Collaborative augmented reconstruction of 3D neuron morphology in mouse and human brains. ''Nat Methods''. 2024 Oct; '''21''' (10):1936-1946 | |
| Neuronal diversity and stereotypy at multiple scales through whole brain morphometry. Description: Liu, Yufeng, et al. Neuronal diversity and stereotypy at multiple scales through whole brain morphometry. ''Nat Commun''. 2024 Nov 26; '''15''' (1):10269 | |
| 4D live tracing reveals distinct movement trajectories of meiotic chromosomes. Description: Xie, Peng, et al. 4D live tracing reveals distinct movement trajectories of meiotic chromosomes. ''Life Med''. 2024 Dec; '''3''' (6):lnae038 | |
| Analyzing the factors affecting virus invasion by quantitative single-particle analysis. Description: Hou, Yi-Ning, et al. Analyzing the factors affecting virus invasion by quantitative single-particle analysis. ''Virulence''. 2024 Dec; '''15''' (1):2367671 | |
| Axons compensate for biophysical constraints of variable size to uniformize their action potentials. Description: Brunner, Janos, et al. Axons compensate for biophysical constraints of variable size to uniformize their action potentials. ''PLoS Biol''. 2024 Dec; '''22''' (12):e3002929 | |
| Increased intrinsic membrane excitability is associated with olivary hypertrophy in spinocerebellar ataxia type 1. Description: Morrison, Logan M, et al. Increased intrinsic membrane excitability is associated with olivary hypertrophy in spinocerebellar ataxia type 1. ''Hum Mol Genet''. 2024 Dec 6; '''33''' (24):2159-2176 | |
| A spheroid whole mount drug testing pipeline with machine-learning based image analysis identifies cell-type specific differences in drug efficacy on a single-cell level. Description: Vitacolonna, Mario, et al. A spheroid whole mount drug testing pipeline with machine-learning based image analysis identifies cell-type specific differences in drug efficacy on a single-cell level. ''BMC Cancer''. 2024 Dec 18; '''24''' (1):1542 | |
| Layer-specific input to medial prefrontal cortex is linked to stress susceptibility. Description: Solakoglu, Sabahaddin Taha, et al. Layer-specific input to medial prefrontal cortex is linked to stress susceptibility. ''Transl Psychiatry''. 2025 Apr 9; '''15''' (1):134 | |
| A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images. Description: Jiang, Shengdian, et al. A Multi-Scale Neuron Morphometry Dataset from Peta-voxel Mouse Whole-Brain Images. ''Sci Data''. 2025 Apr 23; '''12''' (1):683 | |
| Holistic Motor Control of Zebra Finch Song Syllable Sequences. Description: Trusel, Massimo, et al. Holistic Motor Control of Zebra Finch Song Syllable Sequences. ''bioRxiv''. 2025 May 5; | |
| Integrated Classification of Cortical Cells and Quantitative Projectomic Mapping Unveil Organizational Principles of Brain-Wide Connectomes at Single Cell Level. Description: Wang, Yun, et al. Integrated Classification of Cortical Cells and Quantitative Projectomic Mapping Unveil Organizational Principles of Brain-Wide Connectomes at Single Cell Level. ''bioRxiv''. 2025 May 8; | |
| RNA-programmable cell type monitoring and manipulation in the human cortex with CellREADR. Description: Matthews, Elizabeth A, et al. RNA-programmable cell type monitoring and manipulation in the human cortex with CellREADR. ''bioRxiv''. 2025 May 9; | |
| An antisense oligonucleotide-based strategy to ameliorate cognitive dysfunction in the 22q11.2 Deletion Syndrome. Description: Thakur, Pratibha, et al. An antisense oligonucleotide-based strategy to ameliorate cognitive dysfunction in the 22q11.2 Deletion Syndrome. ''Elife''. 2025 May 27; '''13''': | |
| From Morphology to Computation: How Synaptic Organization Shapes Place Fields in CA1 Pyramidal Neurons. Description: Tasciotti, Simone, et al. From Morphology to Computation: How Synaptic Organization Shapes Place Fields in CA1 Pyramidal Neurons. ''bioRxiv''. 2025 Jun 2; | |
| Visual gaze bias motion detection by split eyes in miniature whiteflies. Description: Urca, Tomer, et al. Visual gaze bias motion detection by split eyes in miniature whiteflies. ''iScience''. 2025 Jun 20; '''28''' (6):112730 | |
| Distinct subnetworks of the mouse anterior thalamic nuclei. Description: Hintiryan, Houri, et al. Distinct subnetworks of the mouse anterior thalamic nuclei. ''Nat Commun''. 2025 Jul 1; '''16''' (1):6018 | |
| Filopodia are essential for steroid release. Description: Simon, Eleanor, et al. Filopodia are essential for steroid release. ''Nat Commun''. 2025 Jul 1; '''16''' (1):5501 | |
| Cerebellar basket cell filtering of Purkinje cell responses elicited by low frequency parallel fibre transmission. Description: Masoli, Stefano, et al. Cerebellar basket cell filtering of Purkinje cell responses elicited by low frequency parallel fibre transmission. ''Sci Rep''. 2025 Jul 12; '''15''' (1):25192 | |
| RNA-programmable cell-type monitoring and manipulation in the human cortex with CellREADR. Description: Matthews, Elizabeth A, et al. RNA-programmable cell-type monitoring and manipulation in the human cortex with CellREADR. ''Cell Rep''. 2025 Aug 26; '''44''' (8):116037 | |
| Cytoskeletal control in adult microglia is essential to restore neurodevelopmental synaptic and cognitive deficits. Description: Kessels, Sofie, et al. Cytoskeletal control in adult microglia is essential to restore neurodevelopmental synaptic and cognitive deficits. ''Sci Adv''. 2025 Aug 29; '''11''' (35):eadw0128 | |
| The chloride intracellular channel 1 (CLIC1) is essential for microglial morphodynamics and neuroinflammation. Description: Rifat, Ali, et al. The chloride intracellular channel 1 (CLIC1) is essential for microglial morphodynamics and neuroinflammation. ''Sci Adv''. 2025 Oct 24; '''11''' (43):eads9181 |