PubMed Mentions

    The links below are to publications on PubMed referring to NeuroML. This list is gathered weekly from PubMed automatically and was last updated on December 17, 2025.

    Publication/References
    LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.
    Description: Cannon, Robert C, et al. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. ''Front Neuroinform''. 2014; '''8''': 79
    NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML.
    Description: Birgiolas, Justas, et al. NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML. ''PLoS Comput Biol''. 2023 Mar; '''19''' (3):e1010941
    Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics.
    Description: Dura-Bernal, Salvador, et al. Multiscale model of primary motor cortex circuits predicts in vivo cell-type-specific, behavioral state-dependent dynamics. ''Cell Rep''. 2023 Jun 27; '''42''' (6):112574
    Online conversion of reconstructed neural morphologies into standardized SWC format.
    Description: Mehta, Ketan, et al. Online conversion of reconstructed neural morphologies into standardized SWC format. ''Nat Commun''. 2023 Nov 16; '''14''' (1):7429
    Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics.
    Description: Dura-Bernal, Salvador, et al. Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics. ''Cell Rep''. 2023 Nov 28; '''42''' (11):113378
    Leveraging public AI tools to explore systems biology resources in mathematical modeling.
    Description: Kannan, Meera, et al. Leveraging public AI tools to explore systems biology resources in mathematical modeling. ''NPJ Syst Biol Appl''. 2025 Feb 4; '''11''' (1):15
    Closed-Loop Connectivity Best Supports Angular Tuning and Sleep Dynamics in a Biophysical Thalamocortical Circuit Model.
    Description: Moreira, Joao Vs, et al. Closed-Loop Connectivity Best Supports Angular Tuning and Sleep Dynamics in a Biophysical Thalamocortical Circuit Model. ''bioRxiv''. 2025 Aug 22;