Atlasing of the basal ganglia Releases

atag ATAG_MNI05_Basal_Ganglia_Maps_V2.0

mckeuken@stage.nitrcce.org (max keuken) — Fri, 17 Feb 2017 5:34:00 GMT

Notes:
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The ATAG atlas is an atlas of the:
1) striatum (STR)
2) globus pallidus internal segment (GPi)
3) globus pallidus external segment (GPe)
4) red nucleus (RN)
5) substantia nigra (SN)
6) subthalamic nucleus (STN)
7) periaqueductal grey (PAG)
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The atlas contains probabilistic spatial information based on 30 young, 14 middle aged and 10 elderly subjects. Both hemispheres are included separately and the atlas have the following versions:

Linear vs Nonlinear: The linear version is registered using only linear registration algorithms whereas the nonlinearly version was optimized using a nonlinear registration algorithm.

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See the following article for details regarding subjects, segmentation
methods and registration procedures:Keuken, M. C., Bazin, P-L., Backhouse, K., Beekhuizen, S., Himmer, L., Kandola, A., Lafeber, J.J., Prochazkova, L., Trutti, A., Schäfer, A., Turner, R., Forstmann, B.U. (2017). Effects of aging on T1, T2*, and QSM MRI values in the subcortex. Brain Structure and Function.
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The atlas is distributed under the Creative Commons Attribution 3.0 Unported license, which allows free use and modification of the atlas
but requires attribution to be maintained. Any work using this atlas must cite the article above. The authors and distributors specifically disclaim any warranties, including, but not limited to, the implied warranties of merchantability, fitness for a particular purpose, and non-infringement.This atlas is provided on an "as is" basis, and the authors and distributors have no obligation to provide maintenance, support, updates, enhancements, or modifications.

#########################################################################
# Copyright (c) 2017 University of Amsterdam ## and Max Planck Institute for Human Cognitive and Brain Sciences# #########################################################################

ATAG_MNI1_Basal_Ganglia_Maps V1.0

mckeuken@stage.nitrcce.org (max keuken) — Wed, 12 Aug 2015 14:35:00 GMT

The ATAG MNI04 resolution space resampled to MNI 1mm space

atag ATAG_MNI04_Basal_Ganglia_Maps_V1.0

mckeuken@stage.nitrcce.org (max keuken) — Mon, 31 Mar 2014 9:33:00 GMT

————————————————————————————————————————————————————————————————————————
The ATAG atlas is an atlas of the:
1) striatum (STR)
2) globus pallidus internal segment (GPi)
3) globus pallidus external segment (GPe)
4) red nucleus (RN)
5) substantia nigra (SN)
6) subthalamic nucleus (STh)————————————————————————————————————————————————————————————————————————
The atlas contains probabilistic spatial information based on 30 young subjects. Both hemispheres are included separately and the atlas have the following versions:

Linear vs Nonlinear: The linear version is registered using only linear registration algorithms whereas the nonlinearly version was optimized using a nonlinear registration algorithm.

Normalized vs non-normalized: The normalized version has been scaled so that the probability of overlap ranges between 0.0 and 1.0.
The non-normalized version has a probability range between 0.0 and 30.0. Due to trilinear interpolation the values in the probabilistic
atlas are continues.

Finally a combined version of all the masks are provided which have been tresholded to include the overlapping voxels for at least 10 subjects.

————————————————————————————————————————————————————————————————————————
See the following article for details regarding subjects, segmentation
methods and registration procedures:Keuken, M.C., Bazin, P.-L., Crown, L., Hootsmans, J., Laufer, A., Muller-Axt, C., Sier, R., van der Putten,
E.J., Schafer, A., Turner, R., Forstmann, B.U. (accepted). Quantifying inter-individual anatomical variability in the subcortex using 7T structural
MRI. Neuroimage.
————————————————————————————————————————————————————————————————————————
The atlas is distributed under the Creative Commons Attribution 3.0 Unported license, which allows free use and modification of the atlas
but requires attribution to be maintained. Any work using this atlas must cite the article above. The authors and distributors specifically disclaim any warranties, including, but not limited to, the implied warranties of merchantability, fitness for a particular purpose, and non-infringement.This atlas is provided on an "as is" basis, and the authors and distributors have no obligation to provide maintenance, support, updates, enhancements, or modifications.

#########################################################################
# Copyright (c) 2014 University of Amsterdam ## and Max Planck Institute for Human Cognitive and Brain Sciences# #########################################################################

atag Sub-thalamic nucleus atlas v2.0: STh_middle-aged_Elderly

mckeuken@stage.nitrcce.org (max keuken) — Mon, 25 Mar 2013 12:27:00 GMT

Probabilistic atlas of the Sub-thalamic nucleus for middle-aged and elderly participants in MNI space. Note that the Sub-thalamic nucleus atlas v1.0 contains the probabilistic atlas of the Sub-thalamic nucleus for the young participants.

atag Sub-thalamic nucleus atlas v1.0

pbazin1@stage.nitrcce.org (Pierre-Louis Bazin) — Thu, 04 Oct 2012 8:21:00 GMT

Probabilistic atlas of the Sub-thalamic nucleus in MNI space.