QuickNII - Serial section aligner to volumetric atlases Releases

QuickNII for Windows (x64) 2.2

gergelyc@stage.nitrcce.org (Gergely Csucs) — Tue, 28 May 2019 12:15:00 GMT

QuickNII for Mac 2.2

gergelyc@stage.nitrcce.org (Gergely Csucs) — Tue, 28 May 2019 12:19:00 GMT

QuickNII for Windows (x64) Tools

gergelyc@stage.nitrcce.org (Gergely Csucs) — Wed, 15 Jun 2022 10:47:00 GMT

QuickNII for Windows (x64) 2.2 FileBuilder fix for Windows

gergelyc@stage.nitrcce.org (Gergely Csucs) — Fri, 10 Jul 2020 11:40:00 GMT

This is a standalone release of the FileBuilder utility for Windows users experiencing problems with the bundled one.

QuickNII for Windows (x64) 2.2preview

gergelyc@stage.nitrcce.org (Gergely Csucs) — Tue, 02 Apr 2019 17:07:00 GMT

Preview release for reviewing purposes.

quicknii Demo dataset (WHS Rat)

gergelyc@stage.nitrcce.org (Gergely Csucs) — Tue, 11 Dec 2018 15:13:00 GMT

Some thionine sections for demonstration purposes.
Courtesy of Trygve Brauns Leergaard
(Leergaard et al. 2010 PloSOne Jan 7; doi: 10.1371/journal.pone.0008595)

MR25_Thio.xml - Sample XML descriptor, exactly the same what FileBuilder is expected to generate.
MR25_Thio_final.json - Final, aligned dataset, in the preferred, JSON descriptor format.

A possible use of alignment data is to feed it into a high-resolution pan-and-zoom viewer showing original images.
Example link:
http://cmbn-navigator.uio.no/navigator/filmstripzoom/filmstripzoom.html?atlas=200000&series=5926&preview=WHSRatv2Preview.png

QuickNII for Mac 2.1

gergelyc@stage.nitrcce.org (Gergely Csucs) — Fri, 07 Dec 2018 17:49:00 GMT

QuickNII for Windows (x64) 2.1

gergelyc@stage.nitrcce.org (Gergely Csucs) — Wed, 05 Dec 2018 17:29:00 GMT