NITRC 2008 MICCAI MS Lesion Segmentation Challenge Forum: open-discussion

RE: thanks

Martin Styner — Mon, 18 Apr 2022 18:28:52 GMT

Hi Adam

Just tested the download and it worked.

2 quick points:
- for any download that asks for a password, please look at the README file (which is not password protected)
- it is a https connection with an unregistered certificate, so you will need to tell your browser to allow downloads from it (by making an exception for the unregistered certificate)

Hope this helps
Martin

---

Hello,

I am struggling to download the dataset, none of the hyperlinks on the download page appear to work, if someone could assist me, i would greatly appreciate it,
All the best,
Adam

thanks

adamszekely — Mon, 18 Apr 2022 15:44:24 GMT

Hello,

RE: How to convert .raw file format to nifty/nii..

Roberto Mena — Thu, 17 Dec 2020 19:00:41 GMT

You could use python and SimpleITK, to transform the file. Let`s say you are in the folder `\CHB_train_Part1\CHB_train_Case01` ,
you would do:

>>> import SimpleITK as sitk
>>> img = sitk.ReadImage('CHB_train_Case01_FLAIR.nhdr')
>>> sitk.WriteImage(img, 'CHB_train_Case01_FLAIR.nii.gz')

RE: How to convert .raw file format to nifty/nii..

Ghazn Khan — Sun, 02 Aug 2020 12:36:19 GMT

[i]Originally posted by Najam Ur rahman:[/i][quote]How to convert .raw file format to nifty/nii..[/quote][color=#000000]Hi, [/color]
[color=#000000]Has anyone been able to figure this out?[/color]
[color=#000000]When downloading the dataset it is in .nhdr/.raw format. How would I convert this to .nii format?[/color]

How to convert .raw file format to nifty/nii..

Najam Ur rahman — Fri, 31 Jan 2020 11:08:55 GMT

How to convert .raw file format to nifty/nii..

RE: MICCAI 2008

Martin Styner — Wed, 21 Feb 2018 15:01:24 GMT

sorry for the delayed answer. the data preparation is described in
Styner M., Lee J., Chin B., Chin M.S., Commowick O., Tran H., Markovic-Plese S., Jewells V., Warfield S
3D Segmentation in the Clinic: A Grand Challenge II: MS lesion segmentation. MIDAS Journal - MICCAI 2008 Workshop
http://www.midasjournal.org/browse/publication/638

Best
Martin

MICCAI 2008

Muhammad Imran — Sat, 18 Nov 2017 2:46:50 GMT

Can anybody tell me that what method was used for co-registering the miccai 2008 images?

Welcome to Open-Discussion

Martin Styner — Tue, 24 Oct 2017 10:51:37 GMT

Welcome to Open-Discussion