NITRC BRAINSMush Forum: help

BRAINSTANDALONE project problem.

alaa megawer — Sun, 23 Sep 2012 20:08:28 GMT

i wanna ask can i separate project called iccdef from the whole project. and if yes can u tell me how?

beside i wanna configure the whole project i mean i want to know how can i use it and extend it.

thanks

Alaa

RE: BRAINSMush executable in the build tree?

alaa megawer — Sun, 23 Sep 2012 20:07:14 GMT

Actually i installed successfully with this steps

i used cmake GUI and create unix project then hit configure then generate and finally press make on terminal.

let it build with downloading all file it need.

but i wanna ask can i separate project called iccdef from the whole project. and if yes can u tell me how?

beside i wanna configure the whole project i mean i want to know how can i use it and extend it.

regards

Alaa

RE: BRAINSMush executable in the build tree?

David Welch — Tue, 29 May 2012 14:26:22 GMT

Hi Thanellas,

Not a problem. Looking at your txt file, BRAINS has finished building. There is not installation step because BRAINS is tailored to work primarily with Slicer (www.slicer.org), so it has some architectual decisions that reflect that. You have encountered one of them! :-)

If you look in your lib/ directory, you should find all the executables from BRAINS there, including BRAINSMush. Slicer doesn't like to use command line executables since it has to cache output files to the system, so it prefers libraries. This is a hack, more or less, to get Slicer to play nice with our code.

Hope that helps,
Dave Welch

BRAINSMush executable in the build tree?

David Welch — Tue, 29 May 2012 14:24:44 GMT

From: Thanellas Antonios-Konstantinos <antonios DOT thanella AT aalto DOT fi>Date: Mon, 28 May 2012 18:02:31 +0000To: "David M. Welch"Subject: BRAINS build problem in Ubuntu platformDear David,I found your contact e-mail in the [url=https://github.com/dmwelch]https://github.com/dmwelch[/url] while trying to find a way to overcome some problems when building BRAINS in my Ubuntu platform.I have to apologize in advance if I was not supposed to contact you for such an issue. If this is the case could you please inform me where should I refer to?My problem is the following.While building the BRAINSStandAlone using the guides provided in the README fileI had the following problem:[ 78%] No install step for 'BRAINSTools'[ 78%] Completed 'BRAINSTools'and the bin directory had only very few executable files (not including BRAINSMush which I am mainly interested for).----------------------------------------------------------------------------------------------------------ls /home/dinos/src/brainsmush/BRAINSStandAlone-build/binBRAINSCleanMask ProcessShaderGenerateAverageLmkFile TestlandmarksConstellationTrainingDefinitionIOH5detect vtkEncodeStringH5make_libsettings vtkHashSourceitkTestDriver vtkmkg3statesLmkStatistics vtkParseOGLExtlproj----------------------------------------------------------------------------------------------------------------More details on the building process can be found on the attached .txt file.Thank you in advance and I apologise again if I caused you any discomfort.With best Regards--------------------------------------------------------------------------------Antonios-Konstantinos ThanellasDepartment of Biomedical Engineering and Computational Science (BECS)School of Science and TechnologyAalto UniversityP.O. Box 12200, FI-00076 AALTO, Finland

Welcome to Help

Christian Haselgrove — Wed, 26 Nov 2008 19:55:54 GMT

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