NITRC HAMMER: Deformable Registration Forum: help

RE: Installation Issues

vinutha vikas — Wed, 03 Aug 2016 9:52:17 GMT

hi..
How can i install Hammer on Linux..
can you suggest me step wise procedure...
thank you in advance!!

Hammer tool

vinutha vikas — Wed, 20 Jul 2016 13:10:44 GMT

I am not able to download hammer tool... pls send me the link and manual to perform deformable registration

RE: Problem running example

Andreas Schuh — Tue, 03 May 2011 21:28:26 GMT

<p class="MsoNormal">Even though this topic was discussed already quite some time ago, I would like to add the following.<p class="MsoNormal"><p class="MsoNormal">According to the discussion here [url=http://www.lightcrafts.com/forums/showthread.php?897-Unable-to-save-preferences-%28file-lock%29]http://www.lightcrafts.com/forums/showthread.php?897-Unable-to-save-preferences-%28file-lock%29[/url] the problem can be related to the home directory being mounted via NFS.<p class="MsoNormal">

RE: problem running sample data

Bilwaj Gaonkar — Sun, 27 Feb 2011 23:04:04 GMT

So the current version of HAMMER was designed with FSL 4.0.. may be that is the issue. Have you tried using the CLI?

RE: data preparation for COMPARE *newbie question

Bilwaj Gaonkar — Sun, 27 Feb 2011 23:03:10 GMT

Not necessarily. You could use something else out there. COMPARE can use any type of features . Personally I like Jacobian maps that are the output of fnirt. You could potentially use any other type of registration method

RE: Installation Issues

Bilwaj Gaonkar — Sun, 27 Feb 2011 23:01:35 GMT

HAMMER is compiled on a linux kernel . You could potentially use the Win32 version with an emulator on top

Installation Issues

Alice Graham — Sun, 16 Jan 2011 20:15:03 GMT

Hi, I'm trying to install the Linux version of Hammer on a Mac OS X. It appears to have installed correctly, but when I try to open the Hammer GUI it shows a NetBeans platform only. When I use CLI it recognizes the commands, but the log for each command says "cannot execute the binary file." If anyone has any suggestions it would be much appreciated.

Thanks

data preparation for COMPARE *newbie question

Alexander Lebedev — Wed, 28 Apr 2010 11:40:35 GMT

Dear HAMMER users,

Sorry if it sounds stupid... I have to prepare (construct a morphological profile) my data for SVM-classification in "COMPARE". I would like to clarify one thing... As far as I understood it is possible to use HAMMER (only) in order to perform mass-preserving shape transformations, isn't it?

Thank you beforehand.

problem running sample data

Pahal Dalal — Wed, 21 Oct 2009 18:37:08 GMT

I have downloaded HAMMER 1.0.2 and am trying to run the sample data. I used the values in the user manual to set up the project. However, when I run the "Perform Normalization Step", I get an error "Abnormal termination: 1". What does this mean?

I am on Linux, and have Java 1.6.0_01 and FSL 4.1.4. I get the same result whether I select "Use FSL for Linear Transformation" or not.

Re: [hammer-help forum] i need few images for running hammer

Chris Wyatt — Fri, 12 Jun 2009 12:15:29 GMT

>
There are a few publicly available data sets that are suitable
for testing with Hammer.

E.g.

IBSR
http://www.cma.mgh.harvard.edu/ibsr/

OASIS
http://www.oasis-brains.org/

-- chris.

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