NITRC shapeAnalysisMANCOVA - SPHARM tools Forum: help

RE: download and installation of MANCOVA

Mike Schmidt — Mon, 20 Apr 2015 2:27:55 GMT

[color=#000000]I welcome any corrections to my approach.[/color]

I searched high and low for shapeAnalysisMANCOVA, even failing to get it built from source on github. I then realized that the v1.13 SPHARM-PDM package was missing the BatchMake_Applications subfolder and may have been missing the shapeAnalysisMANCOVA program, too. I checked the v1.12 download where I got my BatchMake_Applications stuff and it had the complete set. I just copied the v1.12 version over to my v1.13 directory. It reports being version 0.0.1:1.8, but that means nothing to me.

Best of luck Mojdeh,
Mike

[i]Originally posted by Mojdeh Zamyadi:[/i][quote]Hi all,

Could someone tell me from where I can download either of the two statistical packages MANCOVA or StatNonParamTest? I don't see any downloadable files in MANCOVA page: http://www.nitrc.org/projects/shape_manc... I've been using the Shape Analysis Module in 3Dslicer, do I need to download the whole package to be able to use the mancova module? Also, are there any installation guidelines for the statistical modules?

Thanks a lot,
-Mojdeh[/quote]

download and installation of MANCOVA

Mojdeh Zamyadi — Mon, 23 Mar 2015 19:47:56 GMT

Hi all,

Could someone tell me from where I can download either of the two statistical packages MANCOVA or StatNonParamTest? I don't see any downloadable files in MANCOVA page: http://www.nitrc.org/projects/shape_manc... I've been using the Shape Analysis Module in 3Dslicer, do I need to download the whole package to be able to use the mancova module? Also, are there any installation guidelines for the statistical modules?

Thanks a lot,
-Mojdeh

RE: ERROR in MANCOVAshape analysis wizard

Long Pun — Thu, 10 Oct 2013 5:32:02 GMT

I also got the same error while running it in terminal.[code]what(): basic_string::compare[/code]I have checked that my vtk and csv files are both good.

The documentation does not even have ONE single line of command code which demonstrates how it all works...

ERROR in MANCOVAshape analysis wizard

Mahsa — Thu, 27 Jun 2013 23:08:41 GMT

Hello,   When I run the example data I get the following error in error log.

<span style="color: #000080;">   vtkMRMLParser (0x210c85b0): Cannot open XML file: /Users/EGI/Desktop/shapeAnalysisMANCOVA_WizardTutorialData/MANCOVA_tutorial_4data_MRMLscene.mrml  </span>

[color=#000080]vtkMRMLParser (0x210a32b0): Cannot open XML file: /Users/EGI/Desktop/shapeAnalysisMANCOVA_WizardTutorialData/MANCOVA_tutorial_4data_MRMLscene.mrml[/color]

    P.S. I am using slicer 3.6.3 and I compiled the recent source code ( 2013-06-07)

  I even tried running shapeAnalysisMANCOVA in terminal :
/Users/EGI/tools/spharm-bin/bin/shapeAnalysisMANCOVA --infileColumn 2 --numPerms 10000 --numGroupTypes 1 --columnGroupTypes 0 --numIndependent 0 --columnIndependent 0 --scaleColumn 0 --testColumn 0 --significanceLevelRawP 0.05 --FDRdiscoveryLevel 0.05 --hotelling /Users/EGI/Desktop/shapeAnalysisMANCOVA_WizardTutorialData/MANCOVA_tutorial_4data.csv

But, I got the following error:

[color=#000080]input file specified: /Users/EGI/Desktop/shapeAnalysisMANCOVA_WizardTutorialData/MANCOVA_tutorial_4data.csv[/color]
[color=#000080]filename: /Users/EGI/Desktop/shapeAnalysisMANCOVA_WizardTutorialData/MANCOVA_tutorial_4data.csv numIndependent: 0[/color]
[color=#000080]Num Subjects: 4[/color]

[color=#000080]data in group_type 0 has been relabeled: 0 --> group A = -1 ; 1 --> group B = 1[/color]
[color=#000080]#(A)= 2; #(B)= 2[/color]
[color=#000080]terminate called after throwing an instance of 'std::out_of_range'[/color]
[color=#000080]what(): basic_string::compare[/color]
[color=#000080]Abort trap[/color]

  Could anyone help me with that?

Thanks,
Mahsa

RE: use of MANCOVA without SPHARM-PDM?

Beatriz Paniagua — Thu, 16 May 2013 19:17:06 GMT

Hi Antonios,

Yes, you can use vtk files with shapeAnalysisMANCOVA as far as they are correspondent meshes (remember statistics are done point-wise).
Regards,

Beatriz

use of MANCOVA without SPHARM-PDM?

Antonios Makropoulos — Thu, 17 Jan 2013 22:33:16 GMT

Hi there,

I have a number of shapes that I aligned with Procrustes alignment, and remeshed so that the surface points correspond to similar across the subjects.
I wanted to ask you whether I could use the shapeAnalysisMancova toolbox for the statistics.
The input in my case would be directly the surface vtk files (converted to .meta).

Thank you,
Antonis

Welcome to Help

Christian Haselgrove — Mon, 16 Nov 2009 17:37:38 GMT

Welcome to Help